Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1310 ATGGAGATGGAAGGGTTGGACAACAACGATGCTACCCACAACATAGCCAAGGGAAAACGCACCAAAAGATTGAGACTTTTGTCCCCTTGTGGCGTTTCCGCGGCTGCCACCACCGTGATTATGACATCTAGCTGCTCAAGTGCAAATTCCGGTGCCTCCTTTTCATCAACCACCACCACTTATGATAGCGCTGATCAAGAAGAGGAAGACATGGCTAATTGCCTGATTCTCTTAGCCCAAGGTAGAGAAGGGGAATCCTATCATCATCATCATCATCATCATCCCAAAGATAATAATCATGATCATAACAAGCAACAAGGTGAGAATCATGATCATGACTATGGTGATGGTAATAAGATAGAAAAGGGTAACGCTAGCAACCGCAGATTTACTGAGATTGCCAACGCAACCGCTAATAATACCAAAGTTGGTTTCTATATTTATGAGTGCAAAACGTGTAACCGAACATTCCCTTCATTTCAAGCATTGGGTGGCCACAGGGCGAGTCACAAAAAGCCCAAACTTGAGGAAAAGAAACCGCCGCTACCACCGCCACCATCGTCACCGCACATGAATGTTGTTGGGAATTATGATCAGTTTGAAGAAGCTCGTGGCCCTCCAATTTCGCTTCAATTGGGGAATCATGGGCATAGAGGTTTCAATGGTAACAACATCAAGGCCAAGATTCATGAATGTTCCATTTGTGGCTCAGAATTCACATCAGGGCAAGCATTGGGTGGACACATGAGAAGGCATAGAGCATCGTCAAACACCAACATGGCTGACACAAGTTGTAACACAACTACCATCACCAACGTTGTCGCTACCGTGGATGTTCCACCTCGGAATATTTTAGAATTGGATCTTAATCTTCCGGCGCCGGAAGATGACCTCCGGGAGGCCAAGTTTCAATTTCCGGCGACCCAAAAGTCTATGGTGCTGGCTGGTGCTCCGCCTTTGGTGGGTTGTCATTATTAG 978 0.4611 MEMEGLDNNDATHNIAKGKRTKRLRLLSPCGVSAAATTVIMTSSCSSANSGASFSSTTTTYDSADQEEEDMANCLILLAQGREGESYHHHHHHHPKDNNHDHNKQQGENHDHDYGDGNKIEKGNASNRRFTEIANATANNTKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLEEKKPPLPPPPSSPHMNVVGNYDQFEEARGPPISLQLGNHGHRGFNGNNIKAKIHECSICGSEFTSGQALGGHMRRHRASSNTNMADTSCNTTTITNVVATVDVPPRNILELDLNLPAPEDDLREAKFQFPATQKSMVLAGAPPLVGCHY* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1310 325 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Apr3g1310 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 175 IPR013087 -
Apr3g1310 325 PANTHER ZINC FINGER PROTEIN ZAT5 1 325 - -
Apr3g1310 325 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 325 - -
Apr3g1310 325 MobiDBLite consensus disorder prediction 84 126 - -
Apr3g1310 325 MobiDBLite consensus disorder prediction 164 191 - -
Apr3g1310 325 Gene3D Classic Zinc Finger 145 252 - -
Apr3g1310 325 MobiDBLite consensus disorder prediction 99 126 - -
Apr3g1310 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 257 IPR013087 -
Apr3g1310 325 Pfam C2H2-type zinc finger 148 173 - -
Apr3g1310 325 Pfam C2H2-type zinc finger 230 254 - -
Apr3g1310 325 SUPERFAMILY beta-beta-alpha zinc fingers 147 252 IPR036236 -
Apr3g1310 325 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
Apr3g1310 325 SMART c2h2final6 230 252 IPR013087 -
Apr3g1310 325 SMART c2h2final6 148 170 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1310 Apr-Chr3 27559012 27560326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1310 3 325 C2H2 Transcription Factor Family AT2G28200 39.266 4.45e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr3g1310 zf-C2H2_6 2.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1310 - - aprc:113858527 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1310 3 27559012 27560326 Apr3g1310 3 27559012 27560326 ECH
Apr3g1310 3 27559012 27560326 Apr8g1843 8 28871441 28872430 ECH
Apr2g2160 2 26727490 26728902 Apr3g1310 3 27559012 27560326 ECH
Apr4g0236 4 1994679 1995515 Apr3g1310 3 27559012 27560326 ECH
Apr8g0541 8 4786773 4787642 Apr3g1310 3 27559012 27560326 ECH
Apr2g2160 2 26727490 26728902 Apr3g1310 3 27559012 27560326 PCT