Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1308 ATGCCCAAGGCCACATCTAGCTTCTCAAATGCTTCTCAAGAGTTGCAAATGTTTCCTGTGACTGAATATTTGGTTTCACCTTCAACTGAAGCAAGTTCTGGCTCAGTTTCAGTTTCTCACTCTCCAAGTTCTCTCCTCTTCTATCTCTCACTCCTCAAAGACAAGCTTAGTCAGCTCCAGAACATGGTTGGTGTTCTTATGACCCCTGAACACAACCTACCCGAGTCAACTTCTCTGGCCATATCCACCATGAACTCCACAATCCAAGAAATCATAGTGGCTGCAAGTTCAATGGGGTTCATTTGTCAACAAATGGCTCTTGGCTCCACTACTCCAGGTACTACTACTAGTACTAACGAATTGCACCTGCAGCAACAAATTGATCATGATAGGTTACCTCATCATCACTCAAACTTTGACAATAATAAGGGTGTACTTAGTAACATTAACATAGGTTCTGATATTACTATTAAAGGGCAAGGTTTCTTTTCCAATACTGAGGCTGAGGCACTAGCTTGGTTTGCTGAAAGTTACAATAATAATAACAGTAGTGGTAACTGTAATCTTAGAGATGATGAAGCCAACATTAATAGTAGAGGAGAATTAATGTCTCGTGGGGATGAAAATGATATAATTGAATTGGATGCTGCGGATTTGTTAGCAAAATACACACATTTTTGCCAAGTTTGTGGCAAAGGATTTAAGCGTGATGCCAATTTGAGGATGCACATGAGAGCACATGGGGATGAGTACAAAACTAGTGCAGCCTTGAGCAACCCAATGAAAAACAAAAGGAGCTTATTGGGTGAGAGCACTGGTACAAAGAAATATTCATGCCCTCATGAAGGGTGTAGGTGGAACCAAAAGCATGCAAGGTTCCAACCCTTGAAGTCTATGGTTTGTATGAAAAACCACTACAAGAGAAGCCATTGCCCCAAAATGTATGTTTGCAAGAGGTGCAACCAGAAACAGTTCTCGGTGCTATCTGATTTGAGGACACATGAGAAGCACTGTGGGGACCCCAAGTGGCAGTGCTCGTGTGGCACTACGTTTTCTAGGAAAGACAAGCTTATGGGTCATGTTGCTTTGTTCGTGGGACACACACCAGCTATTTCAGGGAAATCAGAACAACAGCATATTGCTGGTAGTTCAAAATGA 1158 0.4206 MPKATSSFSNASQELQMFPVTEYLVSPSTEASSGSVSVSHSPSSLLFYLSLLKDKLSQLQNMVGVLMTPEHNLPESTSLAISTMNSTIQEIIVAASSMGFICQQMALGSTTPGTTTSTNELHLQQQIDHDRLPHHHSNFDNNKGVLSNINIGSDITIKGQGFFSNTEAEALAWFAESYNNNNSSGNCNLRDDEANINSRGELMSRGDENDIIELDAADLLAKYTHFCQVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKNKRSLLGESTGTKKYSCPHEGCRWNQKHARFQPLKSMVCMKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVALFVGHTPAISGKSEQQHIAGSSK* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1308 385 Gene3D Classic Zinc Finger 223 298 - -
Apr3g1308 385 PANTHER OS08G0562300 PROTEIN 4 380 - -
Apr3g1308 385 SUPERFAMILY beta-beta-alpha zinc fingers 225 291 IPR036236 -
Apr3g1308 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 252 IPR013087 -
Apr3g1308 385 Gene3D Classic Zinc Finger 313 363 - -
Apr3g1308 385 ProSitePatterns Zinc finger C2H2 type domain signature. 227 247 IPR013087 -
Apr3g1308 385 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 4 380 IPR044300 GO:0010044|GO:0010447
Apr3g1308 385 SMART c2h2final6 277 310 IPR013087 -
Apr3g1308 385 SMART c2h2final6 225 247 IPR013087 -
Apr3g1308 385 SMART c2h2final6 315 337 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1308 Apr-Chr3 27546599 27547756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1308 22 370 C2H2 Transcription Factor Family AT5G22890 47.443 4.83e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr3g1308 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1308 - - var:108339426 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1308 3 27546599 27547756 Apr3g1308 3 27546599 27547756 ECH
Apr2g2159 2 26718023 26720160 Apr3g1308 3 27546599 27547756 PCT