Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1304 ATGGCGAATGGTGCGGATTCAGAGGAGTTTGTTGTGCTTTCTAGGGTACGGACGGGTCTGAAGAGGGAATTTGCCTTCGCCATAAAGGCTCAATCGGAGATTTGCGGTTCTCTCGGTAGAACCCGGTCCAGCCAGACCCGAAATGCAGTTCAGCTTCTTAACCGTTCAGTTGGCAAGAAATTCAAGAAGAACGATTCATTGGAGTCAACGAATGATGATCCCACTGGTTTAGTGAAAATCAAGGATGATGTTGGTGATGTTTTGAGCGAAGAGGAGGCAAAGAGTGACGTGGTGGACCTTGAGGAACCTAAGAGTGAAGTCGAGGCGCACAATGGCAGTGTTATTTCTGGTGAAGGTGAATTCTTGGAGGAGGTGAAGGAAAAGGTGGTGGATGAGATGGCACAACCTGTTTGTGAGATTGAGGTTAAAGAGGGAGAGGATTGTACTCATAAGTATGGTGGTGAATGCAAGGTGAAGCCTTTGAGGAGGTTTACACGATCAACGTTGAGGAAGACACTAGATGATGATGGTAACAGGGTGATGAATGATGTGGGTAATGTTGCTGAGTTTGATGGCGATGTTAAGAAGGAAGGTGAGGGTGGTCCTTCTACTCCAATGAATTTGTCTAAGGCTTGTGTTAGGAAGAAGTTTCCTTTGAAACTGAAAGATCTTCTAAGCTCTGGGATTCTTGAGGGGTTACCGGTGAATTATGTTCGCAGCTTGAAGGTACGAACTCCTGGACTTCGTGGACTGATTTCAGGCAATGGGATTGTGTGCTATTGTGATATTTGTAATGGGGTTGAGGTTGTCACACCCACTATTTTTGAGTTGCATGCTGGTAGTTCAAATAAGCGCCCCCCAGAGTATATTTATCTTGAGAGTGGGTCTACACTCCGTGATATCATGAATACATGTTTGTACATTCCATTGGACACTTTGGAGGAAGCTATCCAAAAAGTCCTTGGGGACTTCACAATGAAGAAATCTAAATTTTGTGTGAACTGCAAAGATGTTAATGTCGTGTCAAGACTATTTTGCAATTCATGCGTGGGGAAGAAGGACTGTCAGCCCAGACCCACTCAAACAATTGAGAATAGTTGTGTTTCACTAGCAGTTCAATCCAGATCACCTGAACCAGTTATACCTCCAAAGTCATTAAACAATGGAATGAAACACAACAACTCTCATGATAAGAATCAGGGAAGACTAACTAGGAAGGATTTACGCTTGCATAAGTTGGTCTTTGATGAAGATGTGTTGCCTAATGGAACTGAAGTAGCATACTATGCTCGTGGAAAGCAACTGTTGGTCGGTCACAAAAAGGGATTTAGAATTGTTTGTAGCTGTTGTAACTGCAAGGTTAGTCCTTCTCAATTCGAAGCTCATGCTGGTTGGGCATCACGACGGAAGCCTTACCTGCACATATACACATCTACTGGAGTCTCGCTACATGAGTTGTCTATCTTGGCATCAATAGGCCGAAGGTTTTCTACCAATGATAATGATGACCTCTGCAGTATATGTCATGATGGAGGGGATCTTTTGTGTTGCGATGGATGTCCAAGAACTTTTCACATAGATTGTGTTCCTCTTCCATGTATACCAAATGGTATCTGGTATTGTAAATATTGTCAGAACTTGTTTCAGAAAGACAAATATGTGGAGCGTAATGCAAATGCTTTGGCAGCTGGAAGGATTGCAGGCATTGATCCTTTAGAACAGATAAATCAAAGATGCATTCGTATTGTCAAAACTCAGGAGCTTGAGTATGGTGGATGTGTACTATGTCGAGGCCAAGATTTTAGCAAAAGCTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAAAGGGAATACCATGTTGGGTGTTTGAGAGATCATAATATGCAGAACCTAGTGGAATTACCTGAAGGGAAATGGTTTTGCTGTTCAGATTGTGATCAAATTCATACAGCTCTAGTGAATTTAGTGGCCCGTGGTGAAGAGAATCTTCCAGATAGCCTCAGAAGTTTGATTAGAAAGAAATTTGAAGAACAAGGTTTAGAAACTAGTGTTGGTCTTGATATAAAATGGAGGGTACTAAACTGGAAATTGGTTGCTTCTCATGAGGCTAGGCAATTACTTTCGAAGGCTGTCGCTATCTTCCACGAGCGATTTGATCCAATAGTTGATTCTAATTCAGGCCTTGATTACATTCCAACAATGCTTTTCGGAAGGGACATCAAAGATCAAGATTTTGGTGGAATTTACTGTGCAGTGCTAACTGTGAATCAAGTGGTTGTATCTGCAGGAATATTTCGTGTGTTTGGATCTGAAGTGGCAGAGCTTCCCTTAGTGGCAACTGTTACTGATTGCCAAGGACAGGGTTATTTCCGGTTCCTATTTTCTTGCATTGAGGATCTGCTTGGATCTTTAAAAGTTAGAAACTTTGTCCTACCCGCTGCTGATAAAGCTGAATCAATATGGATTAACAAATTTGGGTTTTCCAAGCTAGACCAAGATGAGATTAACAATTATCGGAGTTATTACCACATGATGGTATTTCAAGGGACCTCGTTACTAAAAAAGCCAATTCCTGCACTCTAA 2589 0.4202 MANGADSEEFVVLSRVRTGLKREFAFAIKAQSEICGSLGRTRSSQTRNAVQLLNRSVGKKFKKNDSLESTNDDPTGLVKIKDDVGDVLSEEEAKSDVVDLEEPKSEVEAHNGSVISGEGEFLEEVKEKVVDEMAQPVCEIEVKEGEDCTHKYGGECKVKPLRRFTRSTLRKTLDDDGNRVMNDVGNVAEFDGDVKKEGEGGPSTPMNLSKACVRKKFPLKLKDLLSSGILEGLPVNYVRSLKVRTPGLRGLISGNGIVCYCDICNGVEVVTPTIFELHAGSSNKRPPEYIYLESGSTLRDIMNTCLYIPLDTLEEAIQKVLGDFTMKKSKFCVNCKDVNVVSRLFCNSCVGKKDCQPRPTQTIENSCVSLAVQSRSPEPVIPPKSLNNGMKHNNSHDKNQGRLTRKDLRLHKLVFDEDVLPNGTEVAYYARGKQLLVGHKKGFRIVCSCCNCKVSPSQFEAHAGWASRRKPYLHIYTSTGVSLHELSILASIGRRFSTNDNDDLCSICHDGGDLLCCDGCPRTFHIDCVPLPCIPNGIWYCKYCQNLFQKDKYVERNANALAAGRIAGIDPLEQINQRCIRIVKTQELEYGGCVLCRGQDFSKSFGPRTVIICDQCEREYHVGCLRDHNMQNLVELPEGKWFCCSDCDQIHTALVNLVARGEENLPDSLRSLIRKKFEEQGLETSVGLDIKWRVLNWKLVASHEARQLLSKAVAIFHERFDPIVDSNSGLDYIPTMLFGRDIKDQDFGGIYCAVLTVNQVVVSAGIFRVFGSEVAELPLVATVTDCQGQGYFRFLFSCIEDLLGSLKVRNFVLPAADKAESIWINKFGFSKLDQDEINNYRSYYHMMVFQGTSLLKKPIPAL* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1304 862 ProSitePatterns Zinc finger PHD-type signature. 505 544 IPR019786 -
Apr3g1304 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 590 650 IPR013083 -
Apr3g1304 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 568 IPR013083 -
Apr3g1304 862 SUPERFAMILY FYVE/PHD zinc finger 496 547 IPR011011 -
Apr3g1304 862 PANTHER AUTOIMMUNE REGULATOR 1 858 - -
Apr3g1304 862 Pfam Tify domain binding domain 250 305 IPR032308 -
Apr3g1304 862 Pfam Tify domain binding domain 440 486 IPR032308 -
Apr3g1304 862 Gene3D - 689 857 - -
Apr3g1304 862 PANTHER AUTOIMMUNE REGULATOR 1 858 - -
Apr3g1304 862 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 744 834 IPR016181 -
Apr3g1304 862 SUPERFAMILY FYVE/PHD zinc finger 586 645 IPR011011 -
Apr3g1304 862 SMART PHD_3 504 545 IPR001965 -
Apr3g1304 862 SMART PHD_3 592 648 IPR001965 -
Apr3g1304 862 MobiDBLite consensus disorder prediction 379 400 - -
Apr3g1304 862 ProSiteProfiles Zinc finger PHD-type profile. 502 547 IPR019787 -
Apr3g1304 862 CDD PHD1_AIRE 504 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1304 Apr-Chr3 27527024 27532032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1304 178 859 PHD Transcription Factor Family AT2G36720 42.328 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1304 - - lang:109351691 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1304 3 27527024 27532032 Apr3g1304 3 27527024 27532032 ECH
Apr2g2156 2 26699029 26706492 Apr3g1304 3 27527024 27532032 PCT