Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1303 ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTTCTTTCCTGAGGGACTCCCATTCTCAGTCGTCCGGTAGAGGGGGAGATGGAAGAAGAGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAACATGTGGTGAATCAAGTTCAAGCAAGACCTGGTGAAGTGCTTCTTCAACAAAGGAGGGATGGCTTGATTGTGGACCTTTCCCAGGATGATAGACTGGATGGCCAAGAAAGAGGGCGGGGCCATGTTCTTGAAGATGCAGTTTTGGGTGAGAATGAGTCTGAAACATGGTCGCAGTCTCAAAGTCAGAATGAATCCCATGATGATCATGAAGATTTAAACAATTCTAGCTGTGAAAATTCTTCTGATTTGGGGGAAGTTGAAAGGGAAAGAGTGAGACAAATTTTCAGGGAATGGATGAATAGTGGTGCTAGGGATCACGTATCAAACATTTCCCGAAGAAATAATGGTCCAAGGGGAGAATGGCTCGGAGAAACTGAGCAGGAAAGGGTGAGAATTATAAGGGAGTGGGTACAAACAAGTAGCCAGCAGAGAAGTATTTCTTCTGCGGAGAATAGAGAAGAACCATCTGCTGAAATTGACACACAAATTGAACGGGTACGCGATGGGCATATTGTTAACCAGATTGTGGGCCAAACTGAGCTTGTTCGGAGGGGTATCCGTAAATTATGTGGCCGACAGGTTATGCTTGATATGCTTAAGAAAGCTGAGAGGGAAAGGCAAAGAGAAATTCAGGAGTTGTTGGACCATCATGCCGTATCTCATTTCCCCTATCGTAATCGCATTCAGGCACTACTTAGAGGCAGGTTCTTGAGAAATGATAGATCTGTTGATAATAACAGGTCCCCTTCGGTTGCAGAAAGTGAATTGGGCTTATTGAGACGAAAACAAACTGTATCAGGTCTAAGGGAAGGATTTTTCTCTAAAAAGGACAGTAGTGGTTGCAGTCAAGCAACCAGCTATCTATCTGATACCTCATCTAGTATTGATATTGACTTTAATACAAATGAACCAATGGGATCAAGCAGTTCGCATATGGTGCCAAGTGTACATTCTGAATTGTCTGAACCTAACGACAGAGGAAGCAATGAACATGGGATATCAAGTGGTCAGAGCTGTTTACAAGGAACCACATGTGAGAATTTAGATTGGCAAGACTCTACTGGTCAAGTAGAAGACAATCAGTTGCAGCTTTTGCAAATTGAATCAGTAGATCGGCAATCATCGTTCAATGATGGCGCTGAAATAAGGGATGACAGCCATGACACTGAGCAAAATGTTGATGTGATGCCAACTGAAGATATTGCTAATGAACATACCCAAGAGAATTTGCAACCTGATGATTCGGTGCATTGTAATGATCAAGAATTTAGCAACGAACAGAATGAGGAATCTGAGCTGGGTGATATAAGTAATAGTGAAAACTATCCTTCAAATCATGACAATTATGTGGGCGATAATGTTGTGGATGATGTAAATTGGAATGAATCTAGTGCTCTAGAAGGAGAACAGCCTGATGCAGTTATTGGAAATGAAGGAAGTGACTGGTATCAGAGTAATACTGAGTTGATAAATAGCACTGAGGAAAATGTGGATGATCATCAGCTCAGCAATACAGCAAATGACTGGCCAGAACAGAGTTCGGGAAATGAGGATGTAGAAAACTCTCGTCTGCAAGAAACTCCCGATGTGTGGCAAGAAGATGGTGGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGGGGACCTTCTGATCATGAAACTGCTCCAGTTGGTAGAATTCATGGATTTTATTTCCCTGATGACGACAATGTGTACAGTGGTGAACTCAGGGAACTTCTTAGTAGGAGAAGTGTCTCTAATCTCCTTCGCAGCAGTTTCCGTGAGAGTCTTGATCAGTTGATACAATCATATGTTGAAAGGCAAGGTAATGCGCACATTGACTGGGAGCTGCAAGAAACAACACCTTCTTCTGCCTCAGTAGAACAAGACCTTGAACAGCAGAGTAGAGATCAGATTGTTGGTCAGGAGGGTACTGTTAATAGTTCACTTGACCTGCCCTCTTTACCTATACCACCACCTCTGCCTATTTGGGATTCACACCCTCATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGGAATCGATTGGGAGATTGTTAATGACTTGAGAATTGACATGGCTAGACTACAGCAAAGAATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGACAAGAAGTTTCTGCAGCTCTAAATCGATCATCTGGATCGTCAGAAGATAAATCTAAATGGGAATGTGTAAGGAAAGGACTTTGCTGTATATGCTGCGAAAACAATATTGATTCTTTGATGTACAGATGTGGGCATTTGTGTACATGTTCAAAATGTGCCAATGAGTTGGTCCAAAGTAGAAGGAAGTGCCCAATGTGTCAAGCGCCTGTGGTGGAGGTGATACGTGCTTATTCTATACTATAA 2571 0.4286 MAIAGLHSVSVLDSSFLRDSHSQSSGRGGDGRRGSTRSSSLLQMWREIEDEHVVNQVQARPGEVLLQQRRDGLIVDLSQDDRLDGQERGRGHVLEDAVLGENESETWSQSQSQNESHDDHEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHVSNISRRNNGPRGEWLGETEQERVRIIREWVQTSSQQRSISSAENREEPSAEIDTQIERVRDGHIVNQIVGQTELVRRGIRKLCGRQVMLDMLKKAERERQREIQELLDHHAVSHFPYRNRIQALLRGRFLRNDRSVDNNRSPSVAESELGLLRRKQTVSGLREGFFSKKDSSGCSQATSYLSDTSSSIDIDFNTNEPMGSSSSHMVPSVHSELSEPNDRGSNEHGISSGQSCLQGTTCENLDWQDSTGQVEDNQLQLLQIESVDRQSSFNDGAEIRDDSHDTEQNVDVMPTEDIANEHTQENLQPDDSVHCNDQEFSNEQNEESELGDISNSENYPSNHDNYVGDNVVDDVNWNESSALEGEQPDAVIGNEGSDWYQSNTELINSTEENVDDHQLSNTANDWPEQSSGNEDVENSRLQETPDVWQEDGGFQEAVENWLGGPSDHETAPVGRIHGFYFPDDDNVYSGELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGNAHIDWELQETTPSSASVEQDLEQQSRDQIVGQEGTVNSSLDLPSLPIPPPLPIWDSHPHRDNWSQNDINNQRLGIDWEIVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSSGSSEDKSKWECVRKGLCCICCENNIDSLMYRCGHLCTCSKCANELVQSRRKCPMCQAPVVEVIRAYSIL* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1303 856 Pfam Zinc finger, C3HC4 type (RING finger) 801 848 - -
Apr3g1303 856 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 855 - -
Apr3g1303 856 MobiDBLite consensus disorder prediction 547 571 - -
Apr3g1303 856 PANTHER PROTEIN, PUTATIVE-RELATED 1 855 - -
Apr3g1303 856 CDD mRING-HC-C3HC5_NEU1 804 842 - -
Apr3g1303 856 Coils Coil 740 767 - -
Apr3g1303 856 Coils Coil 243 263 - -
Apr3g1303 856 SUPERFAMILY RING/U-box 803 849 - -
Apr3g1303 856 MobiDBLite consensus disorder prediction 349 389 - -
Apr3g1303 856 MobiDBLite consensus disorder prediction 101 136 - -
Apr3g1303 856 MobiDBLite consensus disorder prediction 428 444 - -
Apr3g1303 856 MobiDBLite consensus disorder prediction 18 39 - -
Apr3g1303 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 854 IPR013083 -
Apr3g1303 856 MobiDBLite consensus disorder prediction 423 444 - -
Apr3g1303 856 MobiDBLite consensus disorder prediction 349 368 - -
Apr3g1303 856 ProSiteProfiles Zinc finger RING-type profile. 804 843 IPR001841 -
Apr3g1303 856 MobiDBLite consensus disorder prediction 457 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1303 Apr-Chr3 27511018 27516392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1303 770 850 C3H Transcription Factor Family AT3G06140 33.333 5.78e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1303 - - gmx:100801329 1303.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1303 3 27511018 27516392 Apr3g1303 3 27511018 27516392 ECH
Apr2g2155 2 26685960 26691278 Apr3g1303 3 27511018 27516392 ECH
Apr2g2155 2 26685960 26691278 Apr3g1303 3 27511018 27516392 PCT