Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1302 ATGGAACTTTACAACCGGAGATTGTTGCTGCAAAACGAGGATCTTCCAATCTTCACACACATACCTCCTCTCCCTCACATCCAAGCGCCACCACCACAATCCTCAACCTTCGGAAACCCTTTGCAATTATCCATACGTCCAATTTTCGCTTCCAGCGTTGCATATGCTTTCCTCATCTTCTTCACAGCCCTTTTCTTCATCGGCTTCATCTTGTTATACATCCGTCAATTCTCCGCCTCGCACTCATTCCGCCGCCACGTTCCATCGTGCCGAAGTGTGGACCCCGCCGTGGCGAAGTCCCTGCCGGTGGTTTCCTACCGCGAAGACGCGAAGCAAGTAGAGTGCGCGATATGTTTGGAAGAGTTCGGAGACGGTGACGCGGTGAAGATGATCCCTCACTGCAGGCACGTGTTTCACCCGCAATGCATTGACACGTGGCTCGCTTCGCACGTGACGTGCCCTGTTTGCCGGTGCAGCGAGTTGTGTGAAGAAGGAACGAATGGAGAAGAAGGAAGAGAGGTGGGGTCGGTGTCAGTGAGAGGGGAAGAAGGGACAGTGATGGCTACAAGTTTGGATTAA 579 0.5285 MELYNRRLLLQNEDLPIFTHIPPLPHIQAPPPQSSTFGNPLQLSIRPIFASSVAYAFLIFFTALFFIGFILLYIRQFSASHSFRRHVPSCRSVDPAVAKSLPVVSYREDAKQVECAICLEEFGDGDAVKMIPHCRHVFHPQCIDTWLASHVTCPVCRCSELCEEGTNGEEGREVGSVSVRGEEGTVMATSLD* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1302 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 161 IPR013083 -
Apr3g1302 192 Pfam Ring finger domain 114 157 IPR001841 -
Apr3g1302 192 SUPERFAMILY RING/U-box 105 160 - -
Apr3g1302 192 PANTHER RING FINGER DOMAIN-CONTAINING 19 161 - -
Apr3g1302 192 CDD RING-H2_EL5_like 114 157 - -
Apr3g1302 192 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Apr3g1302 192 SMART ring_2 115 156 IPR001841 -
Apr3g1302 192 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 19 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1302 Apr-Chr3 27507765 27508388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1302 51 168 C3H Transcription Factor Family AT2G27940 39.041 5.11e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1302 - K10664 gmx:102663476 186.037