Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1295 ATGTCTCGTCGTGGTGCCGGTAAGCAACCCGACCTCCGCCGTCAACAACCATCGCCGGCGACTTCACAATTCTCCCCCACCGGAAGAGGCCGCGGCCGAGGACGCGGAGCACGTCCCTCACCTGCTCCTTCTCCTGTGCATGCGCCTCCTCCGGCCTCCGTTCCGCCTGTTGCTGCATCAAGTTCATCTGCCCCTCCTCCGTCTCCCACGACGGAATCTCTGAGTTCTGAAGTTGAGCAGAAACTCACATTGCAGTCACCGGCGCCGCCGTCCTCGTTGAAAGCCATCAGGTTCCCGGACCGGCCTGGTTACGGTAAAGCTGGACTGAAAATCCAAGTTCGCGCTAATCACTTTCTGGTCCAAGTTGCTGAGCGGGATCTCTACCACTACGATGTATCCATCACTCCCGAGATTACTTCGAAAAAGGTGTGTAGAGAGGTGATGAGTCTCTTAACGCAAATGTATCATGACGTAATGGGAAAGCGCACACCAGCTTATGACGGGCGAAAGAGTCTTTTTACTGCAGGACCATTGCCTTTTCAATCAAAGGAATTTGTAGTCAAACTTAGTAATGACGATGAACAAGTCTCCTCCTCTTCTCGTGAACGTGAGTTTAGAGTGACAATCCGGTATGCTTCGAAGACTGATCTTCACCATCTTACTCAGTTTCTGAATCGACTTCAGCTGGATTGTCCACAAGAAACCATTCAAGCTCTTGACGTTGTTTTGCGGGCAACACCATCTTATAAGTACGATGTTGTCGGGAGGTCGTTCTTCGCGCCGGAGCTTGGGCAACCTGGTCCACTTGGGGGTGGTATTGAGTATTGGAGAGGATATTACCAAAGTCTTAGAGCAATCCAGATGGGGCTTTCTCTTAATATTGATGTATCAGCTCGGGCGTTTTATGAGAAGATTATGGTGATAGAATTCATTGAGAAACATTTTAAATTTAATCTTTCAAGGCCTTTATCTGATCAAGACCGCGTTAAGATTAAGAAAGCTTTGAGAGGAGTCAAGGTAGAACTTATTAATGGACAGAATATTAGAAGTTACAAAGTTACTGGAGTCACCAAAGAACCACTCAGAGACTTAATGTTTACCCTTGATGACAAAGTAACCAAAAAATCGGTCGTCCAATATTTCCGTGAGAAATACAATATTATGTTGAAGTACCTAGTTCTACCTGCTCTCCAAGCTGGTAGTGACACAAAACCGATTTATCTGCCAATGGAGCTGTGTCAGATTGCAGCTAGACAACGATACACTAAAAGATTGAATGAGGAGCAAGTGACTGCTCTTTTAAGGGCAACCTGTCAGCGTCCTTACGATAGAGAAAACCTTGTCAAAAAGATTGTGGGGCAGAACAATTTCAATGCAGACAAGTTTGTGCGTGACTTTGGGATTCGAGTAAAGGAGGATCTAGCATTGATAAATGCTCGTGTTTTGCCACCTCCAAGGCTTAAATATCATGAAACAGGCAAAGAATCAAATGTTGAACCACGAATGGGTCAGTGGAATATGATTGATAAGAAAATGGTTAATGGGGGTAATGTTCAACATTGGACTTGCGTCAACTTTTCAGTTAGATTGAACAGAGACATGCCATATGTATTTTCTGATGAATTGGTCAAAATGTGTTCCAGTAAGGGAATGAATTTTAATCCACAGCCGTTAATACCTATATCTTTTGCTCAACCTACACAAATAGAGAATGTTCTTGTTAATATTCATAAGCAGTGTAGGGCTAAACTTGCAACTAAGGAGAGACTCCAATTATTGATAATAATTTTGCCTGATTCCACGGGGTCTTATGGTGAAATAAAGCGCATATGTGAAACAGAATTAGGAATAGTGTCTCAGTGTTGTCGGCCGAGGCAGGTTGAAAGGTTGAACAAGCAATATCTTGAAAATCTTGCCCTCAAGATAAATGTTAAGGTTGGTGGTCGAAACACAGTGTTAACTGATGCAATTGCGTTGAGAATCCCTCATGTGTCTGATAATCCTACATTAATATTGGGTGCGGATGTAACGCATCCGCAACCAGGGGAAGACTCCAGTCCATCTATAGCCGCAGTAGTGGCTTCCATGGATTGGCCTGAGGTCACAAAGTACAGAGGAATTGTTTCTGCTCAGGCTCACCGTGAAGAAATTATTCAGGATCTTTATAAACTAACACAAGATCCTGTGAAGGGACAAGTCCACGGTGGAATGATCAGGGATTTACTCCGGGCTTTCCGTGCGTCAACCGGGCATAAGCCTCATAGGATTATATTCTACAGAGACGGAGTTAGTGAGGGCCAATTTAGTCAGGTTTTGCTTTATGAGATGGATGCTATAAGAAAGGCTTGTGCCTCGTTAGAAGAAGGATATTTACCCCCAGTGACGTTTGTGGTTGTCCAGAAAAGACATCACACCCGTCTCTTTCCTGCTGATCATAGACGTCGTGATCAGACGGATAGAAGTGGAAATATAATGCCAGGGACTGTTGTGGACACAGCCATTTGCCATCCTCGGGAATTTGATTTTTACCTCAATAGCCATGCTGGAATTCAAGGAACTAGTCGACCAACTCATTATCATGTATTGTTCGATGAAAATGGATTTAGCGCAGATGAGTTGCAAACTCTGACAAATAATTTATGCTACACGTATGCAAGGTGTACCCGATCAGTGTCAATAGTTCCTCCCGCATATTATGCACACTTGGCAGCTTTTCGTGCTCGCTGCTACATTGATGGTGAAATATCAGAAGCTGGTTCTGCTAGTGGCAGCAGGACAAATTTTGAGATGACATTGCCCTCAGTCAAGGAAAACGTTAAAGACGTGATGTTTTTCTGCTGA 2841 0.4428 MSRRGAGKQPDLRRQQPSPATSQFSPTGRGRGRGRGARPSPAPSPVHAPPPASVPPVAASSSSAPPPSPTTESLSSEVEQKLTLQSPAPPSSLKAIRFPDRPGYGKAGLKIQVRANHFLVQVAERDLYHYDVSITPEITSKKVCREVMSLLTQMYHDVMGKRTPAYDGRKSLFTAGPLPFQSKEFVVKLSNDDEQVSSSSREREFRVTIRYASKTDLHHLTQFLNRLQLDCPQETIQALDVVLRATPSYKYDVVGRSFFAPELGQPGPLGGGIEYWRGYYQSLRAIQMGLSLNIDVSARAFYEKIMVIEFIEKHFKFNLSRPLSDQDRVKIKKALRGVKVELINGQNIRSYKVTGVTKEPLRDLMFTLDDKVTKKSVVQYFREKYNIMLKYLVLPALQAGSDTKPIYLPMELCQIAARQRYTKRLNEEQVTALLRATCQRPYDRENLVKKIVGQNNFNADKFVRDFGIRVKEDLALINARVLPPPRLKYHETGKESNVEPRMGQWNMIDKKMVNGGNVQHWTCVNFSVRLNRDMPYVFSDELVKMCSSKGMNFNPQPLIPISFAQPTQIENVLVNIHKQCRAKLATKERLQLLIIILPDSTGSYGEIKRICETELGIVSQCCRPRQVERLNKQYLENLALKINVKVGGRNTVLTDAIALRIPHVSDNPTLILGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYKLTQDPVKGQVHGGMIRDLLRAFRASTGHKPHRIIFYRDGVSEGQFSQVLLYEMDAIRKACASLEEGYLPPVTFVVVQKRHHTRLFPADHRRRDQTDRSGNIMPGTVVDTAICHPREFDFYLNSHAGIQGTSRPTHYHVLFDENGFSADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARCYIDGEISEAGSASGSRTNFEMTLPSVKENVKDVMFFC* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1295 946 MobiDBLite consensus disorder prediction 1 99 - -
Apr3g1295 946 MobiDBLite consensus disorder prediction 64 90 - -
Apr3g1295 946 Pfam PAZ domain 328 433 IPR003100 GO:0005515
Apr3g1295 946 Gene3D - 661 946 IPR036397 GO:0003676
Apr3g1295 946 CDD Piwi_ago-like 461 911 IPR045246 -
Apr3g1295 946 Gene3D - 481 654 - -
Apr3g1295 946 Pfam Mid domain of argonaute 500 578 IPR032473 -
Apr3g1295 946 ProSiteProfiles Piwi domain profile. 592 912 IPR003165 GO:0003676
Apr3g1295 946 ProSiteProfiles PAZ domain profile. 305 417 IPR003100 GO:0005515
Apr3g1295 946 Pfam Piwi domain 593 911 IPR003165 GO:0003676
Apr3g1295 946 CDD PAZ_argonaute_like 307 416 - -
Apr3g1295 946 SUPERFAMILY PAZ domain 110 458 IPR036085 GO:0005515
Apr3g1295 946 Pfam N-terminal domain of argonaute 110 243 IPR032474 -
Apr3g1295 946 SMART Piwi_a_2 592 912 IPR003165 GO:0003676
Apr3g1295 946 MobiDBLite consensus disorder prediction 42 63 - -
Apr3g1295 946 PANTHER PROTEIN ARGONAUTE 1A 61 926 - -
Apr3g1295 946 Pfam Argonaute linker 2 domain 443 489 IPR032472 -
Apr3g1295 946 Pfam Argonaute linker 1 domain 254 303 IPR014811 -
Apr3g1295 946 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 61 926 - -
Apr3g1295 946 SUPERFAMILY Ribonuclease H-like 585 912 IPR012337 -
Apr3g1295 946 SMART PAZ_2_a_3 309 442 IPR003100 GO:0005515
Apr3g1295 946 MobiDBLite consensus disorder prediction 14 28 - -
Apr3g1295 946 Gene3D paz domain 299 421 - -
Apr3g1295 946 SMART DUF1785_2 252 304 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1295 Apr-Chr3 27424313 27430194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1295 53 946 Eukaryotic Initiation Factors Gene Family AT1G48410 57.900 0.0 1083
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1295 K11593 - gmx:100799033 1318.52