Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1293 ATGGCCACCGAAATTCAAAGTTCCGCGGTCCCCTCATCATTCCGGCGCAGGATAGCATCTGGCAAAATCATTCCCACAATGCCAGATTTAGCGAACCTCTCTCTCTCTGCAACTCTTTCACTCCCTCATTGCTCCTCCGATGCTCCGCTCAAAACCCTACCCAACAGCTTCGTTTCCGAACCTCCCTTCGAACCTCGGGTTCTGAAGCGCACCCGCGGTTCCCTGGATCGGGTCCAAAAGCCCAACAATAACAAGCCCTTCGAGGATCGCCTCAAAGATCCCTTCTCTCTTCCTTTTCTTGTTGGTGCTTCTAAGATGGATGAATGTTGCTTTTGTCGCCATTGTATCTGCCCTGGAGAGGAATTGCTATGTTCTGTTCGTGGATGTGATGCACGCTACCACGTGGAATGTGCAAAAGAAGTGGTTGGAGCTGCGAGTCTGAAAAAGTTCAAATGCCCACAACATGTATGCTTCATTTGCAAGGCAAAAAAACAATTGACGTGTGTGCGTTGCAAAATTGCGTTCCATAGTAAATGTGCACCATGGCCAGATGCAGTGATGCATCTTAAAGATCATCCTGGGCAAGCTGTTTGTTGGAGGCATCCTTCTGATTGGCGCCTGGATAGAAAGGAAGTATTTTGTCGCTTGCCTCTTCCATTTATCAGTGAGGAGTTTAAGATTGACTTCACTTGGAAAGACATGGACAATAAAATGGAGCCACCACCATATGTGCACATAAGACGCAATATATACCTAGTGAAGAAGAAGCGTAGTGATGTGGATGATGGTGCAGGGTGCACCAGTTGCAGTTCTATGTGTTCGGATGATTGTGTGTGCAGGGTTCAATGCATAAGCTGCTCAAAGGCTTGTCGTTGCTCAGAAAATTGCAATAATCGGCCATTTCGGAAGGAAAAAAAGATCAAGATCGTCAAGACTGAACTTTGTGGATGGGGAGTGGAGGCCGCCGAAACAATCGATAAAGGTGGATTTATAATCGAGTATATTGGTGAAGTCATTGATGATGCTTTATGCGAAAAAAGGCTTTGGGACATGAAATACAGGGGTGTACAGAATTTTTACATGTGTGAGATTCGGAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATACATCACGATTTTTAAACCATAGCTGCGATCCCAACTGTGTTTTGGAAAAGTGGCAAGTTGATGGTGAAACACGTGTGGGTGTATTTGCTGCTCGTTCAATAGAAGTTGGAGAGCCGTTGACATACGATTACAGATTTGTGCAGTTTGGTCCAGAGGTGAAATGCCACTGTGGCGCTGCAAATTGTCAAGGCTTTCTAGGGACGAAAAAGAAAATTGGCAAGGTAGATCTGTGTTGGGGCTCGAAACGTAAGCGAACATCAAATGGTTGCATTCCGTTAGTAACAGCAGCTGTATGA 1428 0.4538 MATEIQSSAVPSSFRRRIASGKIIPTMPDLANLSLSATLSLPHCSSDAPLKTLPNSFVSEPPFEPRVLKRTRGSLDRVQKPNNNKPFEDRLKDPFSLPFLVGASKMDECCFCRHCICPGEELLCSVRGCDARYHVECAKEVVGAASLKKFKCPQHVCFICKAKKQLTCVRCKIAFHSKCAPWPDAVMHLKDHPGQAVCWRHPSDWRLDRKEVFCRLPLPFISEEFKIDFTWKDMDNKMEPPPYVHIRRNIYLVKKKRSDVDDGAGCTSCSSMCSDDCVCRVQCISCSKACRCSENCNNRPFRKEKKIKIVKTELCGWGVEAAETIDKGGFIIEYIGEVIDDALCEKRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCHCGAANCQGFLGTKKKIGKVDLCWGSKRKRTSNGCIPLVTAAV* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1293 475 Pfam SET domain 316 421 IPR001214 GO:0005515
Apr3g1293 475 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 92 470 - -
Apr3g1293 475 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 27 475 IPR025787 -
Apr3g1293 475 ProSiteProfiles Post-SET domain profile. 428 444 IPR003616 -
Apr3g1293 475 SMART PostSET_3 428 444 IPR003616 -
Apr3g1293 475 SUPERFAMILY SET domain 223 434 IPR046341 -
Apr3g1293 475 PANTHER SET DOMAIN PROTEINS 92 470 - -
Apr3g1293 475 SMART set_7 305 428 IPR001214 GO:0005515
Apr3g1293 475 Gene3D SET domain 222 461 IPR046341 -
Apr3g1293 475 ProSiteProfiles AWS domain profile. 262 305 IPR006560 GO:0005634|GO:0018024
Apr3g1293 475 ProSiteProfiles SET domain profile. 305 422 IPR001214 GO:0005515
Apr3g1293 475 CDD SET_ASHR3-like 306 444 - -
Apr3g1293 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 204 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1293 Apr-Chr3 27404987 27411255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1293 286 443 C2H2 Transcription Factor Family AT2G23740 37.430 1.88e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr3g1293 SET 4.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1293 - - aprc:113859744 996.112