Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1292 ATGGAGAGCAATGGCGATTACAGTTCAGAGGAGGAAGGCATTGAAGATTACAGGCGTGGAGGGTACCATGCGGTTCGAGTTGGTGACACTTTCAACGATGGCTGCTACATCGTCCACTCCAAACTCGGTTGGGGTCACTTTTCCACCGTCTGGCTGGCTTGGGACACTCTCAATTCGCGTTATGTAGCGCTCAAAATTCAGAAGAGTGCGCAGCACTACACGGAAGCTGCGATGGATGAAATAAAGATTCTCAAACAAATTGCTGAGGGGGACCCTGACGACAAGAAATGTGTTGTGAAGCTTTTGGATCACTTTAAGCATTCTGGGCCTAATGGTCAGCATGTGTGTATGGTTTTTGAATTCTTGGGTGACAATCTTCTCACCCTTATCAAATATAGCGACTATCGTGGGGTTCCTCTCCCCATGGTTAAAGAAATTTGTTTTCATATTTTGGTGGGGTTGGATTACTTGCATCGTGAGCTTTCAATCATACACACTGATTTGAAGCCAGAGAATGTGTTGCTTCTGTCATTGATAGATCCATCTAAGGATCCTAGAAAATCAAGTGCTCCTGCTCCGCTTATCATTCCAAACACCAAGGATAAGACTGTGTCCTATAATGGGACTACCCAAGAAAATAAAGTTTTGAATGGAGATTTGACAAAGAACCAGAAAAAGAAAATGCAGAGACATGCTAAGGTAGCTCAAGGCTGTGTTGAGAAGGAAAGTTCAGACGATGGTGAGGAGAATTATAAAGTACCTGAGCAAGATTGCAGTAATGGTGTGAAATCAAGTGTGGGATGTGTTGAAGATAAACCTAATAGTTCATTGAGTAAAGATGAATCAACAAAGACTTTTGAAAAGGATGTTTCACAAGGAAGTCCTGGTCATAGGAGAGCTAGCCGTTCCATGGGAAAGAAATTGCTGGCAGCTGTTGATCGTAAGTGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACTTATAAACAATTCACAAATGATATTCAAACAAGGCAGTATAGGTGTCCTGAGGTTCTTCTTGGATCTAAATACTCAACTCCAGCAGATTTATGGTCGCTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGAAAACTATGATAGAGATGAGGACCATCTGGCATTGATGATGGAGCTTCTTGGGATGATGCCTCACAAGATTGCACTAGGTGGCCGGTATTCCCGAGAATTTTTCAATAGACACGGGGACTTGAGACACATCAGCAATTTGCGATGCTGGCCAATGGATAAGGTGCTGATGGAGAAATATAATTTCAGTGAGCAAGACGCAACTGACATGGTTGACTTTCTTGTTCCAATACTTGATTTTGTACCAGAAAAGAGACCAACGGCTGCTCTGTGTCTTAGTCATCCATGGATCAGTGCAGGTCCTCGGACTCTTGAGCCCTCAATAACTACCATGCTACCTGATGCCATCAATGAGGAATTGTTAGAAAAGAAGAAGAGGGAAAGGGCTGAGCAGGAGGTAGTGGAAATTGCTTTGAGGAATGCAGCCATTAGTGGAACTCCTGAGCCTCTCAAAGATTCCCAACCTCAAAAGTCATCGAAATAG 1620 0.434 MESNGDYSSEEEGIEDYRRGGYHAVRVGDTFNDGCYIVHSKLGWGHFSTVWLAWDTLNSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICFHILVGLDYLHRELSIIHTDLKPENVLLLSLIDPSKDPRKSSAPAPLIIPNTKDKTVSYNGTTQENKVLNGDLTKNQKKKMQRHAKVAQGCVEKESSDDGEENYKVPEQDCSNGVKSSVGCVEDKPNSSLSKDESTKTFEKDVSQGSPGHRRASRSMGKKLLAAVDRKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSLACICFELATGDVLFDPHSGENYDRDEDHLALMMELLGMMPHKIALGGRYSREFFNRHGDLRHISNLRCWPMDKVLMEKYNFSEQDATDMVDFLVPILDFVPEKRPTAALCLSHPWISAGPRTLEPSITTMLPDAINEELLEKKKRERAEQEVVEIALRNAAISGTPEPLKDSQPQKSSK* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1292 539 PANTHER SERINE KINASE-LIKE PROTEIN 5 537 - -
Apr3g1292 539 MobiDBLite consensus disorder prediction 217 302 - -
Apr3g1292 539 Gene3D Transferase(Phosphotransferase) domain 1 308 476 - -
Apr3g1292 539 MobiDBLite consensus disorder prediction 233 253 - -
Apr3g1292 539 ProSiteProfiles Protein kinase domain profile. 36 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1292 539 CDD STKc_SRPK 25 476 - -
Apr3g1292 539 Gene3D Transferase(Phosphotransferase) domain 1 90 182 - -
Apr3g1292 539 Gene3D Phosphorylase Kinase; domain 1 22 121 - -
Apr3g1292 539 MobiDBLite consensus disorder prediction 274 295 - -
Apr3g1292 539 SUPERFAMILY Protein kinase-like (PK-like) 31 487 IPR011009 -
Apr3g1292 539 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 537 - -
Apr3g1292 539 SMART serkin_6 36 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1292 539 Pfam Protein kinase domain 312 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1292 539 Pfam Protein kinase domain 37 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1292 539 ProSitePatterns Protein kinases ATP-binding region signature. 42 65 IPR017441 GO:0005524
Apr3g1292 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1292 Apr-Chr3 27398522 27402779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1292 6 539 EF-hand Containing Proteins AT5G22840 65.746 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Apr3g1292 Pkinase 8.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1292 K08832 - gmx:100790060 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1292 3 27398522 27402779 Apr3g1292 3 27398522 27402779 ECH
Apr2g2147 2 26612215 26616235 Apr3g1292 3 27398522 27402779 PCT