Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1285 ATGGAACCGCCAGTTGTTAGATCGAGGGGTCGTCCGCGGAAACGGAGAAGAAAAGAGGACGAAAACGATGTGAAATTGGCTCCTGAAGCGAAGAAGCAAGCTATGGGGACACGATCGATAGCATTAGTTGGAAAAAATGTGCTGAAAGAGTTCCCTAGAAATGGACTTTTTCTCGGGAAAGTTGTGTATTACGAGTGCGGGTTGTATAGAGTTAATTACGAGGATGGTGATTTTGAGGATTTAGATAGTAGTGAGGTTCGCAGGATTCTTCTCAATGAAGATGATTTTGATATTGATTTAGCAAAGAGGAGAGGTAAATTGGAGGAATTAGTGTCACGGAATAATGCCAAAGTCAAAGCTGTTTCTGAGAAGGGCTCTGCTGTAGCAAATAAGGAGGAATCTGTGGTTGATGTGCCTGTTTCAAGTGAATTGAATGGTGCGTCATTGGGTAAAAATGATGAGGAAGAGGGTGACGATGATGATGCGGATGCTGATTCTTCGAGTGACTCAAGTGCAGGTTTTAGGGATAGGGATTCTGGGTCTGATGCTGAGACACTTCAACCCTTACTTCCACCATTGCAGTTGCCGTCTTCGTCTGGAACCATTGGTGTGCCTGAGCCATGTGTTTCACAACTATTTGCTGTTTATGGATTTTTGAGATCATTCAGCATTCGCTTGTTTCTACTGCCTTTTACTTTGGATGAGTTTGTTGGGTGCCTTAATTGCCAAATTTCAAACACTTTGTTTGATGCCATTCACGTTTCACTGTTGCGGGCATTGAGGCATCATCTTGAAATCATTTCGTCTGAAGGCTCTGAGCTTGCATCACAATGCCTTAGGTGCAATGATTGGAGCTTGCTTGATACATTGACATGGCCTGTTTTTGTGATTCAGTATTTAGTAGTTAATGGGTACACAAACAGACCTGACTGGAAAGGATTTTATGACGAGGTTTTTAATGGCGAGTATTATTTGATGCCTGTAAGTAGGAAATTAATGATATTGCAAATTCTATGTGATGATGTTTTGGAATCTGAGGAGCTAAAATCAGAAATGAACTTGCGGAAAGAATCAGAGGTTGGGACAGATTATGATTATGAGGCAGAAGATATCATTCCTTCAGAAGTTGGGCCAAGAAAAGTTTCAGCATCAAATGCTGTGAACCAACCTGGGAACTCCATTTCATATCTCAGGGACACAGAAAATACTGAAGATGGCGATGTTGATAGAAATGGAGATGAATGTCGCCTCTGTGGTATGGATGGGACCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGATGAAAATGTATATACCAGAAGGGCCTTGGTATTGTCCAGAGTGCAAAATTAATATGACTGGCCCAACTATTGCGAAGGGCACATCACTTCGAGGGGCTGAAACATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGTACTTGCGAGCACTTACTTGTGCTCAATATTGACAATGATGAATTTCGTCTTAAATATTACAATCAGAATGACATTCCTAAGGTTCTTCAAGTGCTTTATGAACCCATGCAGTATAGACCACTTTACCATGATATTTGCATGGCAGTGTTACAATATTGGAGCATTCCAGAAAGTTTCTTGCCTCTTGCTGTTTCAACTGGAACAGATGTAAAGTCAGTAAATATAAAGGAAGAGACAGCTCTCTCTACATCACTTCCCCCTCTGGGTGAAGGCAATCATAAACCTGTTAGTTTGGTGAAGGAAGAGTACCCTCTTACCACTGTGAATTCAGTTCATAGTGTTATGGTGCCATCTCTTGATCCTTCATCAGTTTCCACTCAAAGTCCTGCTCCTGCAAGCAGTGGCAATATTAGCAGTAAAGAGTGCCCTACTGTGAATATGAAGCTGCCTGAGGACACTAGGATGGAGCCTGTCATCTCTGCTGATCTTGGTTCTGTTTCTGTTAGTTATCATTCTGATGTGAACTATCAAAGTTCTGTTAATAGGTCAAGTGCCGTAGATCCTGCTAAGTGCTCTTTGGTAAACAGCCAATTTATTAATTATGGCCATGCAAATCATACAGGGATGCCTATAAATTTTTCTTTGCAAACCAAAGAAAGCACCCAAATAGGTTTTGGGAAGTGTGAACGCAACATTACTAATGATTCTGGGTACATGGGTTTCTCCTATAAACCCTTGTCATACATTAATTATTATATGCATGGTGATTTTGCTGCATCAGCAGCTGCTAAATTTGCCATTTTATCCTCAGAAGAATCTAGGTCAGAGGGTCATGTGTCTGACAATCAGCGGAAAACTGCATCTGGAAACACTTACTTGCAAGCTAAAGCATTCTCACTAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAAGTTCCAAGAGAGAGGTGTGGCTGGTGTTTTTCTTGTAAAGCCCCTATCTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTATAAGTGCCACAAAAAGTGCTATGAAAATCCTTGCTGGTTTTTCTCCTATAAGGAGTGGAGACGGAATACTTCCTAGCATTGCAACTTACATTATATACATGGAGGAATGTCTACGTGGTTTGGTAGTTGGGCCCTTCCTAAGTGCAAGCTATAGAAGGCAATGGCGTAAGCAAGTAGAACAGGCCACAACGTTCAGTGCTATCAAGCCACTTTTACTTAAACTTGAGGAGAACATTCGAATGATTGCTTTTTGTGGGGACTGGGTTAAGTTGATGGATGATTGGCTTGTTGAATTTTCCATAATACAAAGTACTACATCTACTCTTGGAACAACACAGAAACGTGCACCAGGTGGAAGGCGTTACAAGAAGCAGTCAGCTATTGATGAAGCTACTGCTGATGGTTGCCCTGAAAATTTTGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCAGTTTTGCCTAAATCCATGATCAGAAAAACAGCTCGTCAAGGTGGTTTGAGGAAAATTTCTGGTATTTTCTATGCTGATGGCTCTGAAATCCCTAAAAGAAGTAGACAGCTTGGTTGGAGAGTTGCAGTTCAAATGAGTAGGAATGCATCACAGCTGGCACTTCAGGTCAGATATCTAGATTTTTATCTCAGATGGAGTGATCTTATTCGTCCAGAGCAGAACATCCAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTTCGAAATGCAAATATTTGTGATAAAAAACTTGTTGAGGGAAAAAGTCTTTACGGAATAGCTTTTGGAAGCCAAAAGCATCTTCCTTCTCGAGTGATGAAAAATGTTGTTGAAATCGAGCAGGGTCCAGAAGGAAAGGAAAAGTATTGGTTTTCAGAAACACGTATTCCTTTATATTTGGTAAAAGAGTACGAAGAAGGTAATGGAAATGTGCCATGTGATGAAGAACACCAGAGTACTGCATCTGAGTCACATAGAAGGCGGTTGAAAGCTGCCTGCAAGGACATTTTTATTTACCTTACCTGCAAGAGAGATAACTTGGATGTTTTCTCATGTTCTGTATGCCATATGGGTGTTTTAATTCGGAATGCTCACAGGTGTAGTGCATGTCAAGGGTATTGTCATGAGGGCTGTGCCATAAGTTCAGCAATCTCTGCAAATGAAGTTGAGTACTTGACCACGTGCAAACAATGTTACCATGCCAGGTTACTTGCCCGAAAAGAGACTAGCAATGAATCTCCAACCAGTCCCTTACTCCTACAAGGACAAGAGAGTAACCCGGGGACAGTTTTGAAGGGACCTAGGCCTAAATCTTATGATCAATTACTAAAATCTGCCAGGACAAAGTCTAATAATCCTGACATGAAACAGGTTACTCCTGTGGCAGTTTTGAAGGGAATGAAGGCTAAATGCTATGAACAAGAATCAACTTCTACCAGGACAAAGGATAGTCATTCTGACATGAAACAAGTTACTTCTGATTCCACTTTGGCAGCAAAAAGCCATCGCAAGAATTGTTCTTGGGGGATTATATGGAAAAAGAAAAATAATGAGGATACAGACATTGATTTCAGGCTCAAAAACATACTTTTAAAGGGAGGTTCATGCATTCCTCAATTGAAACCTGTTTGTCACTTGTGTCGTAAGCCATATAGGTCTGATCTGATGTATATTTGCTGTGAGACATGTGGAAACTGGTATCATGCTGAAGCTGTTGAACTTGAAGAATCCAAAATTTCTAGTGTGTTGGGCTTCAAATGTTGCAAATGTCGCAGGATAAAGTCGCCTGTTTGTCCATACTCTGACTTGAAGCCTAAGAGACAAGAGGGCAAGAAGTCACGCACAAGGGCTTCAAAGAAAGAGCATTCTGGAGCAGATTCTGATTCTGGAACATTTTCTGATATGAGAGAGTGTGAACCCGCTACTCCTGTCTTTCCTGGGGAGGATGATCCTCTTCTTTTCTCTCTTTCAAGTGTTCAGCTGATAACAGAACCTAGGTTTAATGGGGATGTTGACTGGAACAGTGTCTCTGGGTCAGGGCTTCAGAAACTGCCAGTGAGAAGGCATGTTAAGCATGAGGGGGATGGTGATGGTTCTTTTGGTGATATACCTTTGCATGCTGAATTCTCAATATACAGTGACGCAGGTAATCTGGCTACACCTGCACAGTTGTCATCAGCTTTAGAATCTGACACAGCTGTGCCCTTTGACAGCAAGTTGCCGAATGACTCTGAAAATGTAAATTTTGCTGACATGGATTTTGAACCCCATACCTACTTCTCTGTGACTGAACTGCTGCACCCAGATGATAGTAGTCAGTTTGAGGGAGTTGATGTGTCTGGGGACTTGACAGGATATTTGGAAAATTCTTGTACCCTTGTTCCTGAAGAATGTGGAGATTTTAGTTTAGTTGATAAATCAGAACCTGCATATTCCTTACAAGACACCGGCTATTGTTGTTGGAGATGTTCACAAATGGAACCAGCACCTGATCTCTGTTGTGAAATTTGTGGGATTATGATTCACAGCCAATGTTCGCCTTGGGTCGAATCACCATCTAGGCTTGGAAGTTGGAGGTGTGGGAACTGCCGGGAATGGGAATAA 5109 0.4175 MEPPVVRSRGRPRKRRRKEDENDVKLAPEAKKQAMGTRSIALVGKNVLKEFPRNGLFLGKVVYYECGLYRVNYEDGDFEDLDSSEVRRILLNEDDFDIDLAKRRGKLEELVSRNNAKVKAVSEKGSAVANKEESVVDVPVSSELNGASLGKNDEEEGDDDDADADSSSDSSAGFRDRDSGSDAETLQPLLPPLQLPSSSGTIGVPEPCVSQLFAVYGFLRSFSIRLFLLPFTLDEFVGCLNCQISNTLFDAIHVSLLRALRHHLEIISSEGSELASQCLRCNDWSLLDTLTWPVFVIQYLVVNGYTNRPDWKGFYDEVFNGEYYLMPVSRKLMILQILCDDVLESEELKSEMNLRKESEVGTDYDYEAEDIIPSEVGPRKVSASNAVNQPGNSISYLRDTENTEDGDVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMYIPEGPWYCPECKINMTGPTIAKGTSLRGAETFGKDLYGQLFMGTCEHLLVLNIDNDEFRLKYYNQNDIPKVLQVLYEPMQYRPLYHDICMAVLQYWSIPESFLPLAVSTGTDVKSVNIKEETALSTSLPPLGEGNHKPVSLVKEEYPLTTVNSVHSVMVPSLDPSSVSTQSPAPASSGNISSKECPTVNMKLPEDTRMEPVISADLGSVSVSYHSDVNYQSSVNRSSAVDPAKCSLVNSQFINYGHANHTGMPINFSLQTKESTQIGFGKCERNITNDSGYMGFSYKPLSYINYYMHGDFAASAAAKFAILSSEESRSEGHVSDNQRKTASGNTYLQAKAFSLTASRFFWPSSEKKLVEVPRERCGWCFSCKAPISSKRGCMLNHAAISATKSAMKILAGFSPIRSGDGILPSIATYIIYMEECLRGLVVGPFLSASYRRQWRKQVEQATTFSAIKPLLLKLEENIRMIAFCGDWVKLMDDWLVEFSIIQSTTSTLGTTQKRAPGGRRYKKQSAIDEATADGCPENFVWWRGGKFTKFIFQKAVLPKSMIRKTARQGGLRKISGIFYADGSEIPKRSRQLGWRVAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDKKLVEGKSLYGIAFGSQKHLPSRVMKNVVEIEQGPEGKEKYWFSETRIPLYLVKEYEEGNGNVPCDEEHQSTASESHRRRLKAACKDIFIYLTCKRDNLDVFSCSVCHMGVLIRNAHRCSACQGYCHEGCAISSAISANEVEYLTTCKQCYHARLLARKETSNESPTSPLLLQGQESNPGTVLKGPRPKSYDQLLKSARTKSNNPDMKQVTPVAVLKGMKAKCYEQESTSTRTKDSHSDMKQVTSDSTLAAKSHRKNCSWGIIWKKKNNEDTDIDFRLKNILLKGGSCIPQLKPVCHLCRKPYRSDLMYICCETCGNWYHAEAVELEESKISSVLGFKCCKCRRIKSPVCPYSDLKPKRQEGKKSRTRASKKEHSGADSDSGTFSDMRECEPATPVFPGEDDPLLFSLSSVQLITEPRFNGDVDWNSVSGSGLQKLPVRRHVKHEGDGDGSFGDIPLHAEFSIYSDAGNLATPAQLSSALESDTAVPFDSKLPNDSENVNFADMDFEPHTYFSVTELLHPDDSSQFEGVDVSGDLTGYLENSCTLVPEECGDFSLVDKSEPAYSLQDTGYCCWRCSQMEPAPDLCCEICGIMIHSQCSPWVESPSRLGSWRCGNCREWE* 1703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1285 1702 Pfam DDT domain 208 262 IPR018501 -
Apr3g1285 1702 PANTHER PHD FINGER FAMILY PROTEIN 1 1294 - -
Apr3g1285 1702 PANTHER PHD FINGER FAMILY PROTEIN 1296 1699 - -
Apr3g1285 1702 SUPERFAMILY FYVE/PHD zinc finger 1377 1432 IPR011011 -
Apr3g1285 1702 ProSitePatterns Zinc finger PHD-type signature. 415 456 IPR019786 -
Apr3g1285 1702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 464 IPR013083 -
Apr3g1285 1702 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 1193 1224 IPR017896 -
Apr3g1285 1702 MobiDBLite consensus disorder prediction 1 32 - -
Apr3g1285 1702 SMART PHD_3 1654 1699 IPR001965 -
Apr3g1285 1702 SMART PHD_3 414 457 IPR001965 -
Apr3g1285 1702 SMART PHD_3 1378 1426 IPR001965 -
Apr3g1285 1702 SMART PHD_3 1186 1234 IPR001965 -
Apr3g1285 1702 MobiDBLite consensus disorder prediction 1245 1272 - -
Apr3g1285 1702 ProSiteProfiles Zinc finger PHD-type profile. 412 459 IPR019787 -
Apr3g1285 1702 Pfam PHD-finger 415 457 IPR019787 -
Apr3g1285 1702 ProSiteProfiles DDT domain profile. 206 266 IPR018501 -
Apr3g1285 1702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1374 1432 IPR013083 -
Apr3g1285 1702 MobiDBLite consensus disorder prediction 1245 1263 - -
Apr3g1285 1702 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1294 - -
Apr3g1285 1702 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1296 1699 - -
Apr3g1285 1702 MobiDBLite consensus disorder prediction 607 632 - -
Apr3g1285 1702 MobiDBLite consensus disorder prediction 1439 1462 - -
Apr3g1285 1702 SMART testlast3 206 266 IPR018501 -
Apr3g1285 1702 SUPERFAMILY FYVE/PHD zinc finger 381 458 IPR011011 -
Apr3g1285 1702 MobiDBLite consensus disorder prediction 1310 1324 - -
Apr3g1285 1702 MobiDBLite consensus disorder prediction 1310 1329 - -
Apr3g1285 1702 CDD PHD_SF 1654 1698 - -
Apr3g1285 1702 MobiDBLite consensus disorder prediction 1439 1481 - -
Apr3g1285 1702 MobiDBLite consensus disorder prediction 607 631 - -
Apr3g1285 1702 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 309 353 IPR028942 -
Apr3g1285 1702 MobiDBLite consensus disorder prediction 143 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1285 Apr-Chr3 27331001 27339468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1285 296 558 EF-hand Containing Proteins AT5G22760 48.070 3.15e-68 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Apr3g1285 DDT 5.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1285 - - lang:109351702 2367.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1285 3 27331001 27339468 Apr3g1285 3 27331001 27339468 ECH
Apr2g2138 2 26551423 26560462 Apr3g1285 3 27331001 27339468 PCT