Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1284 ATGGAGGATCAGAACCATACGGTTAATGACTCTCTAACTTTAAGCACCACCCAGAACGAGTCACCCCCCACTGAAACCAAAGCACACACCAACACCAACACCACAACCACCGCCACCGACAACAACAACAACAGCGTTGTTAATGCTGTTGGAGTTGATTATGCTTTAACTGTAACCGTACCGAAGTCCGAGACTGAAAATTCGGGACAAGCGGTGAAGAGAGGAAGAGGGAGACCTCGAAAATATGACGTTAATGGAAACATGATGTCTCCGGTGTCGGCGCCGTCAGGATTTCCCGATCATGCTATTGAAAGCACGGTCAAGCGAAGTAGGGGACGTCCTCGTGGTTCTGGAAAACTGCAGATTCTGGCTGCCATTGGTGGGTATATTGCAGAAACAGCTGGGGGAAGCTTCACACCTCATGTGTTGACTGTGAGCACTGGGGAGGATGTGGTAAGTAAGATAATATCATTTTTCCAAAGAGGTCCACGGGCAGCTTGCATACTTTCTGCTACTGGTGTTGTTTCAAGTGTGATCATTCGCCAATCTTGTGTTTCTGGTGGCTTTCTGAGATATGAGGGCCTCTTTGAGATATTATCTTTATCTGGATCATTTACCCACACTAGTGGCGCTAGTGGTGCACATCGTACAAATGGCACATTAAGTGTTTTACTGGCTAAACCTGATGGGAGGGTTTTTGGAGGTTGCATTGAGAGCTCATTGATAGCTGCTGGCCCTATTCAACTTGTCATGGCCACTTTCAAGCAAAACATAAGCAATCAAATCAAGAAAAGACTCTTACCTGAATCTTCCAATGCTCCCAACATGCCAGACATTCCAGATTTAGAAAGGGATCCCCCAAAGGTTCAGAAGTTGATGGAAGGTGTCCAGAGTAGCCCTTCACCAAAATCAGAACATGGTCCAACAGAAACAACTAATGACATAGTTGAAAATGTCAATTCTGCAACAACTAATGAAGTGGCTGATAATGTTATTCCTGCTGATGACAACATGCACTCTGCCTCTGTTAATGGTGTTGACTTGGAATGTCACATCCATCAACCTATCACAGACAAAGGAACTTCTGCTGATACTGATGCAAGTGTCACAAAGATGTGA 1119 0.4513 MEDQNHTVNDSLTLSTTQNESPPTETKAHTNTNTTTTATDNNNNSVVNAVGVDYALTVTVPKSETENSGQAVKRGRGRPRKYDVNGNMMSPVSAPSGFPDHAIESTVKRSRGRPRGSGKLQILAAIGGYIAETAGGSFTPHVLTVSTGEDVVSKIISFFQRGPRAACILSATGVVSSVIIRQSCVSGGFLRYEGLFEILSLSGSFTHTSGASGAHRTNGTLSVLLAKPDGRVFGGCIESSLIAAGPIQLVMATFKQNISNQIKKRLLPESSNAPNMPDIPDLERDPPKVQKLMEGVQSSPSPKSEHGPTETTNDIVENVNSATTNEVADNVIPADDNMHSASVNGVDLECHIHQPITDKGTSADTDASVTKM* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1284 372 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Apr3g1284 372 SMART AT_hook_2 73 85 IPR017956 GO:0003677
Apr3g1284 372 MobiDBLite consensus disorder prediction 61 85 - -
Apr3g1284 372 CDD DUF296 139 254 IPR005175 -
Apr3g1284 372 MobiDBLite consensus disorder prediction 266 312 - -
Apr3g1284 372 Gene3D - 140 270 - -
Apr3g1284 372 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 258 - -
Apr3g1284 372 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 355 IPR039605 GO:0003680
Apr3g1284 372 PANTHER DUF296 DOMAIN PROTEIN 1 355 - -
Apr3g1284 372 MobiDBLite consensus disorder prediction 294 312 - -
Apr3g1284 372 PRINTS AT-hook-like domain signature 73 83 IPR017956 GO:0003677
Apr3g1284 372 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Apr3g1284 372 MobiDBLite consensus disorder prediction 7 44 - -
Apr3g1284 372 MobiDBLite consensus disorder prediction 1 44 - -
Apr3g1284 372 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 255 IPR005175 -
Apr3g1284 372 ProSiteProfiles PPC domain profile profile. 135 275 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1284 Apr-Chr3 27313110 27317647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1284 68 264 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 46.009 1.23e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1284 - - gsj:114378162 330.102