Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1280 ATGGAAGTACCAATGGAGTTTTGGGGTGTTGAGGTGAAGGTGGGTCAGTCTGTTAAGATAGACCCAGCGGAACCATCAAGTGGATACATACATGTTTCGCAGGTTGCACTTGGGGAGGCTAAAAAAGACAAAGCAAGTGAACCTGTGGTTCTGTACTTGAAAGTTGATGACCAGAAGTTTGTTTTGGGAACCCTTTCTAGGGATGATATTCCTCAACTATCTTTGGATTTAGTTCTCGACTCGGAGTCTGAGTTTTCCCACAATTCAAAGAGTGCCAGTGTTTATTTTTGTGGATACAAAGTTCTAACTGGCACTAGTGACGATGGCAATGTTTCTGACTTTTCTGATAGTGATGATGATCTTGCACTGAAGGGCCAAGATAATGGAAAACCTGAAATCAAAGCTGAAGTTGCAAAAGTTGCTAAAACTCCAAAACCTGTTCCAATGGTTGGTGCATCAGCAGAACAAGTCAAGATTGTTGATCCGAAGAAAGATGAAAAGGATGAATCTGATGACGATTCTGATGATGAGTCTGCTGATGAAGATGATTCTGGAAGTTCTGATGAGATGGATGCTGATAGTGACAGTGATGAGGACAGTGAGAGTGATGAAGATGATGAAGAGACCCCTGTTAAGAAGGTGGAACTGGGAAAGAAGAGAGCCAATGAGTCTGCGTCAAAAACTCCAGTTCCCAACAAGAAAGCCAAAAATGCTACTCCTGAAAAGACTGATGGTAAGAAATTTGTACACACGGCAACACCTCACCCCATGAAGAAGGGTGGAAAGACGCTCAACAGCGGTGCAAAGGGCCAGAGTCCCAATTCTGGTGGACAACTATCTTGCAAAAGTTGCAAAAAATCTTTCACTTCCGAAAGTGGTCTGCAACAACATAATAAAGCTAAGCATGGAGGTCAGTAA 918 0.4281 MEVPMEFWGVEVKVGQSVKIDPAEPSSGYIHVSQVALGEAKKDKASEPVVLYLKVDDQKFVLGTLSRDDIPQLSLDLVLDSESEFSHNSKSASVYFCGYKVLTGTSDDGNVSDFSDSDDDLALKGQDNGKPEIKAEVAKVAKTPKPVPMVGASAEQVKIVDPKKDEKDESDDDSDDESADEDDSGSSDEMDADSDSDEDSESDEDDEETPVKKVELGKKRANESASKTPVPNKKAKNATPEKTDGKKFVHTATPHPMKKGGKTLNSGAKGQSPNSGGQLSCKSCKKSFTSESGLQQHNKAKHGGQ* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1280 305 MobiDBLite consensus disorder prediction 207 222 - -
Apr3g1280 305 MobiDBLite consensus disorder prediction 168 206 - -
Apr3g1280 305 MobiDBLite consensus disorder prediction 117 139 - -
Apr3g1280 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 305 IPR013087 -
Apr3g1280 305 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 5 301 - -
Apr3g1280 305 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 5 301 - -
Apr3g1280 305 MobiDBLite consensus disorder prediction 107 305 - -
Apr3g1280 305 MobiDBLite consensus disorder prediction 265 299 - -
Apr3g1280 305 ProSitePatterns Zinc finger C2H2 type domain signature. 281 302 IPR013087 -
Apr3g1280 305 Pfam Nucleoplasmin-like domain 7 100 IPR041232 -
Apr3g1280 305 Gene3D Nucleoplasmin core domain 2 104 - -
Apr3g1280 305 MobiDBLite consensus disorder prediction 237 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1280 Apr-Chr3 27265866 27268806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1280 5 302 C2H2 Transcription Factor Family AT5G03740 39.623 4.87e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr3g1280 NPL 3.4e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1280 - - gmx:547649 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1280 3 27265866 27268806 Apr3g1280 3 27265866 27268806 ECH
Apr2g2131 2 26493831 26497202 Apr3g1280 3 27265866 27268806 PCT