Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1270 ATGGACTTTGAGTATAATGAATGTCCTAATTTCACTTCACAATCATCATCATCCACTTTCATAAGCCATAAACTCTCAGCACCACCAAATCCTACTCCATTATGGGATTCATCAAACCCACAAACGAGTAATAATATTTCATCAAAAAGAAAAGCAGGGAGAAAGAAGTTTAAGGAGACTCGGCATCCAGTGTATAGAGGTGTAAGGCAAAGAAATGGTAACAAATGGGTGTGTGAAATTAGGGAACCAAACAAGAAATCAAGGATATGGGTAGGGACTTACACTACACCTGAAATGGCTGCTAGGGCACATGATGTGGCCGTGTTAGCACTTAGAGGAACCTCAGCAAAGTTCAATTTCCCTGATTCAGCTTTTCTTCTTCCACTTCCAAACTCATGTTCCCCTTCAGATATAAGGGCAGCAGCAGCAAAAGCAAACGCTACCTTTTCTTCCTCTCATAACAATTCTCGTGTTGTGGATACTGAAGACCCTTGTTTGGTTGAAGGGAATAGTCACAAAAGTGTATTGAATATCAGCATGCAAGATGTGGAGGGTGCACTTCATCATGATAATGATGCATTTTTGGATGAGGAAGCACTTTATAATATGCCAGGTTTGTTAGATAGTATGGCAGAGGGTTTGATTATTACCCCACCTTCTATGACTAGAGCAATGGATTCGGAAGATAATGGTTGTCAAATAGACCTTACTCTATGGACAGACTAA 726 0.4022 MDFEYNECPNFTSQSSSSTFISHKLSAPPNPTPLWDSSNPQTSNNISSKRKAGRKKFKETRHPVYRGVRQRNGNKWVCEIREPNKKSRIWVGTYTTPEMAARAHDVAVLALRGTSAKFNFPDSAFLLPLPNSCSPSDIRAAAAKANATFSSSHNNSRVVDTEDPCLVEGNSHKSVLNISMQDVEGALHHDNDAFLDEEALYNMPGLLDSMAEGLIITPPSMTRAMDSEDNGCQIDLTLWTD* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1270 241 MobiDBLite consensus disorder prediction 21 61 - -
Apr3g1270 241 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 240 - -
Apr3g1270 241 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 240 IPR045277 GO:0003700
Apr3g1270 241 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Apr3g1270 241 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Apr3g1270 241 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Apr3g1270 241 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Apr3g1270 241 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Apr3g1270 241 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Apr3g1270 241 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Apr3g1270 241 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1270 Apr-Chr3 27172259 27172984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1270 49 240 AP2-EREBP Transcription Factor Family AT4G25470 46.632 6.79e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr3g1270 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1270 - - gmx:100793751 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1270 3 27172259 27172984 Apr3g1270 3 27172259 27172984 ECH
Apr2g2119 2 26381105 26381839 Apr3g1270 3 27172259 27172984 PCT