Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1269 ATGGCTACAGAGAACACTGTAACTTCAAACCCTAGCAATGGAGAACGACGAAAGGTGCTCGTCGTAACGGGCCCCACCGGTTCCGGCAAGTCGAAGCTTGCCATCGATTTGGCTTCACACTTCGCCGTCGAAATCATCAACGCTGATTCCATGCAAGTATACCGTGGCCTCGACATTCTCACCAACAAAGTCCCTCTCTCTCACCAAAATGGAGTGCCGCATCATCTCCTGGGTACCGTAAGCCCGAACACGGAATTCACTGCTAAAGCGTTTCGCGATTCCGCTATTCCTATCATCGATGCCATATTAGCTCGCAACCACTTGCCTGTTATAGTTGGGGGTACAAATTACTATATCCAGGCTCTAGTGAGTCCGTTTCTGCTAGACGATTCTGCAGAAGATACGAATGAAGGTTGTTTGGATGATCCACCTGGTATTGCGCTGTCTGATAACAGTTTCTTTGCTGAAAACGATGGTTCAAACAATAGTTATGACCTGCTTAAAGATATTGATCCAATTGCTGCAAATAGAATCCATCCAAATAACCATAGAAAGATAAATCAATATATTAGTTTGTATACTCGCACTGGTGTTCTTCCTAGCAAGGTTTTTCAAGGAAAGGCTGCGGAGAAGTGGGGTCAAGTTGATAACTTAAGATATGATTGTTGTTTTATATGTGTGGATGCATCTCTCCCTGTATTGGACAGATATGTGGAGCAGAGGGTAGATTGCATGATGGACGCTGGGTTACTCAATGAAGTCTATGACATTTACAATTTGAATGCAGATTATACAAGAGGTCTGCGGCAGGCCATTGGTGTCCGTGAATTTGAACCTCTTCTTAGAACTTGTTCTGTCAAAGACATGTGTGAAAGAAAGAGGGAATTGACCGAGGGATGCAGCATAGAAAAGGGTGAGAAACTGTTTAATGGTGATCTGATGGAGTTGGTGAGATCTTCCACTGATACTGAATCCGTAGTTCTTTTGGAAGAAGCAATTAAGAAAGTAAAGCTTAATACCCGGAGACTTGTTCGCCGTCAGAAGAGGATGCTCAATCGACTGCAAATACTGTTTGGTTGGAACATACACTATGTTGATTCCACAGAATCAATATCAAGCCAATCAGATGATGTATGGACTGACCAAGTGGTAGAATCTGCCGTAAAGATAGTTAAATCTTTCGTGAGTGAGAATGGAAGCTTCTCATCCACCTTTGGAACATCAACCGAAACGGGGATGAAAACAGTCCAAAGGGACCTCTGGACTCAATATATATGCAAGGCCTGCGGAGATCGGGTACTTAGAGGATCACACGAATGGGAACAACACAGAAGAGGTCGTGGCCACCGAAAACGTATTTCTCATCTTAAGAGTAAGACGTTTCGTGGAAAAGAAGGTGAACATTTCCCAGTGTGA 1416 0.4379 MATENTVTSNPSNGERRKVLVVTGPTGSGKSKLAIDLASHFAVEIINADSMQVYRGLDILTNKVPLSHQNGVPHHLLGTVSPNTEFTAKAFRDSAIPIIDAILARNHLPVIVGGTNYYIQALVSPFLLDDSAEDTNEGCLDDPPGIALSDNSFFAENDGSNNSYDLLKDIDPIAANRIHPNNHRKINQYISLYTRTGVLPSKVFQGKAAEKWGQVDNLRYDCCFICVDASLPVLDRYVEQRVDCMMDAGLLNEVYDIYNLNADYTRGLRQAIGVREFEPLLRTCSVKDMCERKRELTEGCSIEKGEKLFNGDLMELVRSSTDTESVVLLEEAIKKVKLNTRRLVRRQKRMLNRLQILFGWNIHYVDSTESISSQSDDVWTDQVVESAVKIVKSFVSENGSFSSTFGTSTETGMKTVQRDLWTQYICKACGDRVLRGSHEWEQHRRGRGHRKRISHLKSKTFRGKEGEHFPV* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1269 471 Pfam IPP transferase 52 349 - -
Apr3g1269 471 Hamap tRNA dimethylallyltransferase [miaA]. 19 376 IPR018022 GO:0008033
Apr3g1269 471 TIGRFAM miaA: tRNA dimethylallyltransferase 19 293 IPR018022 GO:0008033
Apr3g1269 471 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 16 398 IPR039657 -
Apr3g1269 471 Gene3D - 16 419 IPR027417 -
Apr3g1269 471 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 16 398 - -
Apr3g1269 471 MobiDBLite consensus disorder prediction 439 471 - -
Apr3g1269 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 261 IPR027417 -
Apr3g1269 471 Gene3D - 150 207 - -
Apr3g1269 471 Gene3D Classic Zinc Finger 420 462 - -
Apr3g1269 471 MobiDBLite consensus disorder prediction 444 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1269 Apr-Chr3 27153717 27157227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1269 10 465 C2H2 Transcription Factor Family AT2G27760 55.297 4.53e-177 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1269 K00791 - gmx:100792690 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1269 3 27153717 27157227 Apr3g1269 3 27153717 27157227 ECH