Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1264 ATGGAACCAATCGTAGAGGATCTTACCGAAGACCTTCACAGCCTAAGCTTTACTTCCACCACCACAACTTCCATTAAACGAAGCACAAGCTTCAGCTCCGAAACCACCACCATTACTCCTTCAACCTCTTCTCACTTCTCTTCCGTTTCCCTCTCCGACCTCCGCTTCACCCGCCGCATCGGCTCCGGCGACATCAGCTCCGTCTACCTGGCCCACCCCAAGCAACGCGGCGGCGCATCGTTCGCCGCCAAGGTGATGGAGAAGGAGGAGTTGGCGAGGCGCAGCAAAGAAGGAAGAGCGAGGACAGAGAGGGAAATTCTTCAAATGTTGGAGCATCCTTTCTTGCCCACTCTCTATGCCTTCATCGACGCCCCCAAATGCCTCTGCTTCTTGACGCCCTTCTGCCCCGGCGGTGACTTGCACGCGCTTCGCCAGCGCCACCCCAGCAAACGCTTCCACGAATCCGCTGTCAGGTTCTATGCATCAGAGGTATTGTTAGCACTTGAATACCTACACATGCTAGGGGTAATCTACCGTGATCTGAAGCCCGAAAACGTGTTAGTTCAATCTGACGGTCACATCATGCTCACTGACTTTGACCTCTCCTTAAAATGCGATGATTCCATATCAACGGCTCAGATAATCTCTGATAAAAACCCTACTCCCACTGTCCCACGTAACGAACCTTCTCATGTTACCTCGTCTTCATGCATAATACCCAACTGTATAGTCCCTGCCGTGTCATGTTTCCACCCAAAACGCAAGCGAAAGAAAAAGCATAGACCACACAATGGGCCTGAGTTTGTGGCCGAGCCCATTAATGTTCGGTCCATGTCATTCGTTGGGACCCACGAGTACTTGGCACCTGAGATTGTGTCAGGGGAGGGTCATGGTAGTGCTGTGGACTGGTGGACTTTAGGGATATTTATGTTCGAACTGTTTTATGGTGTGACACCATTCAAGGGCATGGACCATGAGCTAACCTTCGCAAACATTGTGGCTCGAGCCCTTGAGTTTCCGAAGGAACCCACTGCTTCAGCTGCTATGAAAGACCTTATCTCACAGTTATTGGTTAAGGACCCGGCAAGGAGACTAGGGTCAGTGATGGGAGCTTCAGCGATCAAGCACCACTCATTTTTTCAAGGTGTGAATTGGGCATTGCTAAGGTGTACAACTCCACCCTTTGTACCCCCACCTAGTGCTAAAGAAGCTGTAAACGATGACCATGAAAATTGTCCTGAGATTTCCATTGATTATTATTAA 1263 0.502 MEPIVEDLTEDLHSLSFTSTTTTSIKRSTSFSSETTTITPSTSSHFSSVSLSDLRFTRRIGSGDISSVYLAHPKQRGGASFAAKVMEKEELARRSKEGRARTEREILQMLEHPFLPTLYAFIDAPKCLCFLTPFCPGGDLHALRQRHPSKRFHESAVRFYASEVLLALEYLHMLGVIYRDLKPENVLVQSDGHIMLTDFDLSLKCDDSISTAQIISDKNPTPTVPRNEPSHVTSSSCIIPNCIVPAVSCFHPKRKRKKKHRPHNGPEFVAEPINVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFMFELFYGVTPFKGMDHELTFANIVARALEFPKEPTASAAMKDLISQLLVKDPARRLGSVMGASAIKHHSFFQGVNWALLRCTTPPFVPPPSAKEAVNDDHENCPEISIDYY* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1264 420 Gene3D Phosphorylase Kinase; domain 1 53 138 - -
Apr3g1264 420 Gene3D Transferase(Phosphotransferase) domain 1 139 211 - -
Apr3g1264 420 Gene3D Transferase(Phosphotransferase) domain 1 276 398 - -
Apr3g1264 420 CDD STKc_phototropin_like 53 404 - -
Apr3g1264 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Apr3g1264 420 ProSiteProfiles AGC-kinase C-terminal domain profile. 381 420 IPR000961 GO:0004674|GO:0005524|GO:0006468
Apr3g1264 420 PANTHER OS11G0150700 PROTEIN 1 420 - -
Apr3g1264 420 SMART serkin_6 54 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1264 420 ProSiteProfiles Protein kinase domain profile. 54 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1264 420 Pfam Protein kinase domain 57 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1264 420 Pfam Protein kinase domain 277 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1264 420 SUPERFAMILY Protein kinase-like (PK-like) 30 404 IPR011009 -
Apr3g1264 420 PANTHER FLIPPASE KINASE 1-RELATED 1 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1264 Apr-Chr3 27131456 27134428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1264 1 420 AGC Kinase Gene Family AT3G44610 66.225 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Apr3g1264 Pkinase 5.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1264 K08286 - gmx:100811470 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1264 3 27131456 27134428 Apr3g1264 3 27131456 27134428 ECH
Apr2g2117 2 26365752 26369595 Apr3g1264 3 27131456 27134428 ECH