Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1263 ATGAGCGGCGATCGCCGGAGACGTGATCTGAGAGACACCAGAAATTCCAAGAAGCGGAAGCTTATCCGCAACGCCGAGGAAGAGCTCGAAGCTAAATTAGGGTTCGATCTTTTCACAGAGGGCGAAAAGCGACTCGGATGGTTACTCACTTTCTCATCCTCATCTTACGTGGACGAAGACACTCACAAAGTCTATAGTTGCGTTGATCTTTACTTTGTTACTCAGGATGGGTCTACATTTAAGTCAAAATTCAGATTTCGGCCTTATTTCTACGTGGCTACAAAGGATAAAACAGAGATGGATGTTGAAGCATACCTGAGACGGTGTTTTGAAAGTCAGATTGCAGATGTTGAAATTATAGAGAAAGAAGACCTGGATCTCAGAAACCATTTGTCTGGGTTAAGAAAATCTTATTTAAAGCTTTCCTTTGATACTGTGCAACAATTAATGGAAGTGAAGAAAGGCCTGATGCCCATTGTTGAAAAAAATAAGGCAAAGTCTGATGCTGCAGAAGCCTTGGAGTATATATTAACAGGAAGAAGAGAACAAAAACCTCAAGATTTTCTAGATTGCATAACTGAGCTTCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAATGATATACGGTGTGGCCAGTGGTATGATGTTGGAGTGTCCAACAATGGGGTCACACTTGAGAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGTGCATTTGACATTGAGACCACAAAACTTCCATTAAAATTTCCTGATGCTGAATATGACTTAGTTATGATGATATCATACATGGTAGATGGTCATGGATATTTAATCATAAATAGAGAGTGTGTTGGGGATGATATAGAGGATTTAGAGTACACTCCGAAACCAGAGTTTGAAGGGTGTTTTAAGGTGACAAATGTTCAAAATGAGGTTGAACTTCTTAGATTATGGTTTTCTCATATGCAAGAGGTGAAACCTGGTATCTATGTGACGTACAATGGTGATTTCTTTGATTGGCCATTCTTGGAACGAAGGGCAACCCATCATGGGTTCAAAATGAGTGATGAATTAGGGTTTCAATGCGACAAGGATCAAGGGGAATGTCGTGCTAAATATGCTTGCCATTTGGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTTCCTCAGGGTAGCCAAGGCTTGAAGGCTGTTACAAAAGCAAAGTTAGGTTATGATCCTTTAGAGGTGAACCCTGAGGACATGGTTCGCTATGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACTTATGTTCATCCTTTTATTTTTTCACTTGCAACCATTATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGTAGTGGGACCCTCTGTGAAATGTTGCTTATGGTCCAGGCATACAAAGCTAATGTCATTTGCCCTAACAAACACCAATCTGATTCAGAGAAGTTTTTTAATAATCATCTTCTTGAGAGTGAGACGTACATTGGTGGTCATGTGGAATGCCTTGAAAGTGGTGTATTTAGATCTGATATTCCATCTAGCTTTGCACTTGAGCCATCTGCCTATCAGCAATTGATCAACAACCTTGATCGAGATCTACAGTATGCTATAAGAGTGGAGGGTAAGATGGATTTGGAATCTGTCTCTAATTATGATGAAGTAAAGAATGCCATCATGGAAAAGCTTGTAAAATTACGAGATGCGCCAATACGTGAAGAATGCCCCCTCATTTATCATCTTGATGTAGCTGCTATGTATCCAAACATAATCTTAACAAACAGGCTTCAGCCACCATCAATTGTTACAGATGAAGTTTGCACTGCATGTGATTTTAATCGTCCAGGAAAGACTTGCCTACGCAAGCTTGAGTGGGTTTGGCGTGGAGAAACATTCACGGCGAAGAAAAGTGACTATTATCATTTAAAGAAACAGATTGAATCAGAGTTTGTTGATGGTTCTGGGGAGGGGCTGTCAAAATCTTTTCTTGACCTTTCCAAGTTAGAGCAACAATCAAGACTAAAAGAGCGTTTAAAGAAATACTGCCAGAAGGCGTATAAAAGAGTACTTGACAAACCAGTTACTGAACTTCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTTCGGGATAGAAGATATGAATATAAAGGCCTCAATAAGGTTTGGAAGGGAAAACTATCAGAGGCCAAGGCTAGTGGAAATTCTATGAAGATCCAGGAAGCACAAGATATGGTTGTGCTATATGATTCTTTGCAACTTGCTCACAAGTGTATACTTAATTCATTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTCACATATACTGGTGCAAAAATCATTCAGAATGCCCGCTTGCTTGTAGAGAAAATAGGAAAACCACTTGAATTAGACACGGATGGTATCTGGTGTGCACTTCCTGGATCTTTCCCAGAAAATTTCACTTTTAAAACAAAAGGCTCAAAGAAGTTGACAATCTCATACCCTTGTGTCATGCTTAATGTTGATGTGGCAATAAATAATACAAATGATCAGTATCAGACACTCACTGATCCAATTAGAAAAATTTATACAACTCACAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATCCTTCCTGCTTCCAAGGAAGAAGGAATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAACTGAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTTATCAAAGTTTTCCAGGCTGAGCTTTTTGACAAGTTTCTCCATGGTTCAACCTTAGAGGAATGCTATTCAGCTGTTGCTTCAGTGGCAAATCGCTGGCTTGATCTTCTTGATAACCAAGGGAAGGATATTGCAGACAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAATCTTTAGCTGATTATGGGGAGCAGAAGTCATGTGCTGTTACCACTGCTAAACGTCTTGCTGACTTTCTTGGGAAAACAACAGTCAAAGATAAAGGTCTTCGATGTCAGTACATAATAGCAAGTGAACCTAAGGGAACACCAGTGAGTGAGCGCGCTGTTCCTGTGGCAATATTTGAAACTGAAGCTGAGGTAATGAAGTTCTATGTCCGACAATGGTGCAAGGTCTCGTCAGATGTTGGCATTCGATCCATAGTTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCCAATCCTGTCCCTAGGGTAGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAACGAAAGTTAGTCGATGTCTTTAATTCAATGAACAGGAATGAGCGCTCAAAAAAGCATAATGATTCAAATCATGTCCATCTTGTGATGGATGATGAGACTGTTAATGACTTGGAGGACTTTGGAAACAAGGCCAGAAGTTCTGCATGTGGACCCAGACCAATTATACGACATTATGAAGCTAATAATGAACGACATTCAGTGAAGCTCAGTGGTCAAGAAAATTCAAAGCCACAGGATGATGATAATGGCAGCAAGGGTCAGTTACTTTCACCATTACAGCAAAATGAAATATCATGTGAAAATGTTGACAGAAATGTAGATTATCAAGCATGGCTTCAAATAAAGAAGCGAAAGTGGAAAGATATTCGGGAAAGGAGAAAGAAGCAAAGATTGGAGAATGCAAAGAAATCTGACCATTTAAATGGTATTCTTGAACAAATGAATGGTAAGGGGAGTCAGGGAAGAAATAATGTCAGTTCATATCTTAGAAGGCACGAGGCAGATCTAAAACAGTACCACTGGCAGATAGTACAACTTATTCAGAGTTCAGAAATCGGCCAATTTTTTGCTTGGGTTGTTGTGGATGGGATTATGCATAAGATTCCTGTTTCTGTTCCTAGAGTCTTCTACCTGAATACCAGATCACCAACTACTAAAGAATTTCTGGGTAATTGTGTCAACAACACTCTTGCTTGTGGAGGGCATACTAAAAACTTTCAGGTTAAGCGTGTCAGCAAGATTCTTCCTCATGGAAGGCATAGTTATAATCTGTATGAGGTCACGATTAATGAAGTTCAATATAGGGAAGCAAGTAAAACACTTGCAGCTCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACAAAGATGCCACTGGAGTTTAATGCTATAGTCCAGCTTGGTTGTGTATGTAAGGTGGAAAAAACTGCCAAGGAACGTAGTCTACAAGATCCATGGAATTTGAGTGAATTGCACATGAAGACCACAACAGAATGTGCTTATCTTGAACAATCTTTATCCTTTTTTTACTTGTACCATAGCATCTCCGAGGGACGGGCTATATATGTTGGATATTTTCCTGCGTCGAAAGCAATAACTGTTGTGGTAGTTAATCCCTATCAAAACAAAGATTTATCACCAACTTTTCTTGAAAAACAATTTCACGATGCTTCCCAAGCTTTGTCTATTGAGGCACCTCCGAGGAATGGCATTAATTTTAAGGTGGACTATGTTACGCATGTCAAGGATGCTGAAACAGTGATGCAAAGAGCAATAAGTGGTCACAGGAATGAGCATCATGGGCCTATGGTTGCTGTCATTGAGTGCCCAAATGTTCAGCAAGTAAAATTGGGCATTCGAGCTTTGGATGGTTTTCCATGCCTGAGTATTCCTTCTAATGCACGAGATAGTCAGTATCAGATTCTTGGATGGCAACAAGTTGCTGCTAAAATTGGAATGCAACGTTGTGCTGCATCAGTCCAATGGCTAAATGAGAGAATTGCTCTCTCAAGATATGCCCATGTACCGTTGGGGAATTTTGAACTTGACTGGCTTATATTTACAGCGGATATCTTCTTTTCAAGAGCGATGCATGATAAACAGGTACTTTGGATATCTGATGACGGCCTTCCGGATTTAGGTGGCATTAATGGTGAACAGAACTGTTTTGTTGACGAGGTCCACCAACCTGTCCTTACATATCCCGGGGCTTATAGAAAAGTTACTGTGGAGCTAAAGATACACCACCTGGCCGTAGATGCTCTTCTAAAATGCAACCAAGTTAATGAAATGGAAGGTGGTGCTTTATTAGGATTTGATCATGAATATGATTCTGGAGCATTTTCTGGGAATGATCAGAATGGCGTTGATGAGTCTACCTCTTGTGCAAATCCCTTCCGAGTCCTAATACAGTTGATCAGAATGATTCTTGCAGATGCTGCTAAATCACAAAATGTTTATGCTGATGCAATATTGCAACATCTATATAGATGGCTTTGCAGCCCTAAATCTAAACTTCATGATCCAGCTCTCCACCAGCAACTCCACAAGGTCATGCAAAAGGTCTTTGCATTGTTGCTGGCAGAGTTCCGAAAGTTAGGTGCTACAATTGTATTCGCAAATTTCTCAAAGATTATTATAGACACTGGCAAATTTGATCTTTCAACAGCCAAAGCTTATTGTGACAGTTTGTTAAGAACCATACAATCTAGAGACCTATTTGAATGGATTGAGCTTGAACCACTGCAGTACTGGCACTCGTTGCTATTCATGGATCAGTATAACTATGGGGGAATACCAGCAAAATCTGACGAAGCCATGAATGATGAAACTCAAGTTGACATTATATCAAGCTGGAATATTGCTGAATACTTGCCAGAAAAAATCCAAGACCATTTTGTATTTATTGTTTCTCAATTCATGTATATTCCCTGGAATTATGCACAAAAACAAGCAGCAATTAGGTCTTCGTTGCAGAACGGTGACTCCTGTACCCCCTCAATTAACATTGGAGCTGCAGAGGCTTTTGAATCAGATATAAAGGAATATATCAAAGGGCAGGTTAGCTCATACTTCACACACAAACTGCTTGGAATTGTTCATGATATTGGTCTTCATATGAAGGGGATGAGCAGATCAGAAAACAATCATGGCCTTCCTCAAGTTATGGGTGGTGTTCATAGAGGGGATGCTGCCTTGGAATTTATCAAGCATGCCTGTGCTGTCCTGGCTCTTGACCGAAGTGTGCAGCATGATGTTTTGGTAATGAGAAAGAATTTGCTAAAATATGTTGATATCAGGGAGTTTGCTCCAGAGGCTGAGTTTTCTGACCCTTCTCATTCCTTCATCCTATCCAACGTCATCTGCAGCTATTGCAATGACTGCAGAGACTTGGACTTGTGCCGGGACTCAGCTTTATTGACTCAGGAGTGGCGGTGTGCGGTGCCACAGTGCGGCCAGCCTTATGACCGTGAGGTGATGGAGAATGCTCTTCTTCAGATTGTACGACAAAGAGAACGACTATACCATCTACAAGATCTGGTTTGTCTCAGGTGCAACCAAGTTAAAGCTGCACATTTGGCTGAGCAATGTGCATGTGCAGGTTCATTTAAGTGCAAGGAAGATGCAAGTGAATTTCGCGCAAAGATGCAGGTTTTCTTGAACATAGCTTCTCGTCAGAAATTCCAACTTCTCCACGAATGTACCTCTTGGGTTTTAGAACTTAGATAG 6675 0.4058 MSGDRRRRDLRDTRNSKKRKLIRNAEEELEAKLGFDLFTEGEKRLGWLLTFSSSSYVDEDTHKVYSCVDLYFVTQDGSTFKSKFRFRPYFYVATKDKTEMDVEAYLRRCFESQIADVEIIEKEDLDLRNHLSGLRKSYLKLSFDTVQQLMEVKKGLMPIVEKNKAKSDAAEALEYILTGRREQKPQDFLDCITELREYDVPYHVRFAIDNDIRCGQWYDVGVSNNGVTLEKRTDLLQRAEVRICAFDIETTKLPLKFPDAEYDLVMMISYMVDGHGYLIINRECVGDDIEDLEYTPKPEFEGCFKVTNVQNEVELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRATHHGFKMSDELGFQCDKDQGECRAKYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRYAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDSEKFFNNHLLESETYIGGHVECLESGVFRSDIPSSFALEPSAYQQLINNLDRDLQYAIRVEGKMDLESVSNYDEVKNAIMEKLVKLRDAPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGETFTAKKSDYYHLKKQIESEFVDGSGEGLSKSFLDLSKLEQQSRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKGSKKLTISYPCVMLNVDVAINNTNDQYQTLTDPIRKIYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGKTTVKDKGLRCQYIIASEPKGTPVSERAVPVAIFETEAEVMKFYVRQWCKVSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKLVDVFNSMNRNERSKKHNDSNHVHLVMDDETVNDLEDFGNKARSSACGPRPIIRHYEANNERHSVKLSGQENSKPQDDDNGSKGQLLSPLQQNEISCENVDRNVDYQAWLQIKKRKWKDIRERRKKQRLENAKKSDHLNGILEQMNGKGSQGRNNVSSYLRRHEADLKQYHWQIVQLIQSSEIGQFFAWVVVDGIMHKIPVSVPRVFYLNTRSPTTKEFLGNCVNNTLACGGHTKNFQVKRVSKILPHGRHSYNLYEVTINEVQYREASKTLAALLADPDVEGIYETKMPLEFNAIVQLGCVCKVEKTAKERSLQDPWNLSELHMKTTTECAYLEQSLSFFYLYHSISEGRAIYVGYFPASKAITVVVVNPYQNKDLSPTFLEKQFHDASQALSIEAPPRNGINFKVDYVTHVKDAETVMQRAISGHRNEHHGPMVAVIECPNVQQVKLGIRALDGFPCLSIPSNARDSQYQILGWQQVAAKIGMQRCAASVQWLNERIALSRYAHVPLGNFELDWLIFTADIFFSRAMHDKQVLWISDDGLPDLGGINGEQNCFVDEVHQPVLTYPGAYRKVTVELKIHHLAVDALLKCNQVNEMEGGALLGFDHEYDSGAFSGNDQNGVDESTSCANPFRVLIQLIRMILADAAKSQNVYADAILQHLYRWLCSPKSKLHDPALHQQLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKFDLSTAKAYCDSLLRTIQSRDLFEWIELEPLQYWHSLLFMDQYNYGGIPAKSDEAMNDETQVDIISSWNIAEYLPEKIQDHFVFIVSQFMYIPWNYAQKQAAIRSSLQNGDSCTPSINIGAAEAFESDIKEYIKGQVSSYFTHKLLGIVHDIGLHMKGMSRSENNHGLPQVMGGVHRGDAALEFIKHACAVLALDRSVQHDVLVMRKNLLKYVDIREFAPEAEFSDPSHSFILSNVICSYCNDCRDLDLCRDSALLTQEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCLRCNQVKAAHLAEQCACAGSFKCKEDASEFRAKMQVFLNIASRQKFQLLHECTSWVLELR* 2225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1263 2224 Pfam DNA polymerase family B 753 1065 IPR006134 GO:0000166|GO:0003677
Apr3g1263 2224 CDD POLBc_epsilon 503 1121 - -
Apr3g1263 2224 Gene3D DNA Polymerase, chain B, domain 1 55 228 - -
Apr3g1263 2224 Gene3D Palm domain of DNA polymerase 751 936 IPR023211 -
Apr3g1263 2224 MobiDBLite consensus disorder prediction 1207 1236 - -
Apr3g1263 2224 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 33 2221 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Apr3g1263 2224 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Apr3g1263 2224 SMART DUF1744_2 1531 1914 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Apr3g1263 2224 Gene3D - 940 1124 IPR042087 -
Apr3g1263 2224 SUPERFAMILY DNA/RNA polymerases 486 1114 IPR043502 -
Apr3g1263 2224 MobiDBLite consensus disorder prediction 1276 1304 - -
Apr3g1263 2224 SMART polmehr3 239 842 IPR006172 GO:0000166|GO:0003676|GO:0003887
Apr3g1263 2224 Gene3D - 238 468 IPR036397 GO:0003676
Apr3g1263 2224 CDD DNA_polB_epsilon_exo 240 443 - -
Apr3g1263 2224 SUPERFAMILY Ribonuclease H-like 60 490 IPR012337 -
Apr3g1263 2224 MobiDBLite consensus disorder prediction 1207 1228 - -
Apr3g1263 2224 Pfam Domain of unknown function (DUF1744) 1543 1914 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1263 1 2221 Core DNA Replication Machinery Family AT2G27120 66.502 0.0 3013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1263 K02324 - gmx:100812003 3891.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1263 3 27104337 27129852 Apr3g1263 3 27104337 27129852 ECH