Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1251 ATGTACAGCAATTTCAAAGAGCAAGCAATAGAGTACGTGAAGCAAGCGGTGCAAGAAGACAATGAGGGAAACTACGCGAAAGCGTTCCCACTTTACATGAACGCTTTGGAATACTTCAAAACCCACCTTAAGTACGAGAAGAACCCTAAGATCAAAGAAGCAATCACTCAAAAATTCACCGAGTATCTGCGCCGGGCCGAGGAGATCCGGGCCGTCCTCGACGGGCCTGGCCCAGCCTCTAACGGGGACGCTGCCGTTGCCACGCGGCCCAAGACTAAGCCCAAGGACGGCGAGGTTGATGGGGAGGATCCAGAGCAGGCCAAGCTTCGGGCTGGGCTTAACTCGGCTATTATTAGGGAGAAACCGAATGTGAAGTGGAACGACGTCGCGGGGTTGGAGAGCGCGAAACAAGCGCTGCAGGAAGCGGTTATCTTGCCTGTGAAGTTTCCTCAGTTTTTCACTGGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGTCCACCTGGAACAGGTAAATCGTATTTGGCCAAAGCCGTTGCTACAGAAGCTGATTCCACGTTTTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTCCAAATGGCCCGTGAAAGTGCACCTTCTATCATATTTATTGATGAAATAGATTCTCTGTGTGGTCAGCGTGGAGAAGGTAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTACTTGCAGCTACGAATACTCCTTACGCTCTAGACCAGGCAATAAGGCGGCGTTTCGATAAGCGAATATACATTCCCCTGCCAGATTTAAAGGCTCGTCAACACATGTTCAAGGTGCACCTGGGAGATACACCCCATAACTTAAAGGAAGGTGATTTTGAACATTTAGCTCGCCGGACTGAGGGATTTTCAGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAGCCTGTGCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAATCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGAGTGCAGTACAGATTACAATGCAGGAGCTTGCTGCAAAAGGACTTGCTTCTAAGATCCTTCCACCACCTATATCGAGGACAGATTTTGATAAGGTACTTTCTAGACAAAGACCTACAGTAAGCAAGGCTGACCTTGATGTTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGTTAA 1293 0.471 MYSNFKEQAIEYVKQAVQEDNEGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDGPGPASNGDAAVATRPKTKPKDGEVDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLKEGDFEHLARRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQSAVQITMQELAAKGLASKILPPPISRTDFDKVLSRQRPTVSKADLDVHERFTKEFGEEG* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1251 430 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Apr3g1251 430 Pfam ATPase family associated with various cellular activities (AAA) 164 293 IPR003959 GO:0005524|GO:0016887
Apr3g1251 430 CDD AAA 130 293 - -
Apr3g1251 430 ProSitePatterns AAA-protein family signature. 265 284 IPR003960 GO:0005524|GO:0016887
Apr3g1251 430 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 430 - -
Apr3g1251 430 SUPERFAMILY MIT domain 2 76 IPR036181 -
Apr3g1251 430 MobiDBLite consensus disorder prediction 89 104 - -
Apr3g1251 430 Pfam Vps4 C terminal oligomerisation domain 363 427 IPR015415 -
Apr3g1251 430 SMART AAA_5 159 295 IPR003593 -
Apr3g1251 430 CDD MIT_VPS4 4 74 IPR045253 -
Apr3g1251 430 Gene3D - 6 74 - -
Apr3g1251 430 SMART smart 2 79 IPR007330 -
Apr3g1251 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 426 IPR027417 -
Apr3g1251 430 Gene3D - 295 410 - -
Apr3g1251 430 MobiDBLite consensus disorder prediction 73 104 - -
Apr3g1251 430 Gene3D - 122 418 IPR027417 -
Apr3g1251 430 PANTHER AAA DOMAIN-CONTAINING 1 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1251 Apr-Chr3 26970717 26974600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1251 158 351 Calmodulin-binding Proteins AT3G56690 37.245 1.73e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1251 K12196 - gmx:100788150 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1251 3 26970717 26974600 Apr3g1251 3 26970717 26974600 ECH
Apr2g2106 2 26277270 26282704 Apr3g1251 3 26970717 26974600 ECH
Apr2g2106 2 26277270 26282704 Apr3g1251 3 26970717 26974600 PCT