Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1245 ATGGGTTTCATGGAGTGCAATGTAGAGGACAATAAGAATCTATACCTTCATACCCCAACTTTCATTGAGTGGCTCAAACCTTGTCCCTCCCCTTCATATCCAAATTCATTATCATCTTCGTCTTCATCATCATCGTCATCTTCTTCTTTCACTCAGAACGAACTTGTTCAGGAAACTATCCAATTCTTGCCCGTTCTGAGTGAAAAAGCCTCAAAAGATGAAGATCATGGAGTTAAAATGGAGGGTTTTGAGGTGAAGGAAGAAAATATTGAACAAGTAACTGTAGCTTTGCACATTGGATTGCCTCACACTAGAGGAGATGCTGATGTTGATGAGAAGAAGATTTTCCTTGTTAAGGAAGAAGAAGAGTCCTCTAAGAGAAGCTTCCATGGATGCACTTTTAACCAAGAGAGAAGGTTTTGGATACCAACTCCTGCACAGATCCTTGTTGGGCCTATGCAGTTTGCTTGCTCCATATGTAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCACGGATCCGAATATAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCAGCAATGCTAAGGTTACCATGTTATTGCTGTGCCGAGGGTTGCAAGAACAACATCAACCATCCAAGAGCTAAGCCATTGAAGGACTTTAGAACACTCCAAACCCACTACAAAAGAAAGCATGGCACAAAGCCATTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTATGGTATTGCACTTGTGGCTCAGACTTTAAGCACAAAAGATCCCTTAAAGATCATATTAGATCCTTCGGAAAGGGACATAACCCTCTTCCTCCTTTTAAAGCTTTTGAGGATGAGAAGGAATGCATTACTGGATCAGATGAAGATGAAGTTAATGCTCATACATGA 957 0.4148 MGFMECNVEDNKNLYLHTPTFIEWLKPCPSPSYPNSLSSSSSSSSSSSSFTQNELVQETIQFLPVLSEKASKDEDHGVKMEGFEVKEENIEQVTVALHIGLPHTRGDADVDEKKIFLVKEEEESSKRSFHGCTFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEYRKGPDSLKGTQPAAMLRLPCYCCAEGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPLPPFKAFEDEKECITGSDEDEVNAHT* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1245 318 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Apr3g1245 318 SMART c2h2final6 155 177 IPR013087 -
Apr3g1245 318 SMART c2h2final6 239 259 IPR013087 -
Apr3g1245 318 SMART c2h2final6 202 234 IPR013087 -
Apr3g1245 318 Gene3D Classic Zinc Finger 154 177 - -
Apr3g1245 318 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 315 - -
Apr3g1245 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Apr3g1245 318 SUPERFAMILY beta-beta-alpha zinc fingers 225 259 IPR036236 -
Apr3g1245 318 Pfam Zinc finger, C2H2 type 155 174 IPR013087 -
Apr3g1245 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 259 IPR013087 -
Apr3g1245 318 PANTHER ZINC FINGER PROTEIN WIP2 1 315 IPR043584 GO:0003700|GO:0010468
Apr3g1245 318 Gene3D Classic Zinc Finger 235 292 - -
Apr3g1245 318 SUPERFAMILY beta-beta-alpha zinc fingers 146 178 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1245 Apr-Chr3 26930110 26933394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1245 7 307 C2H2 Transcription Factor Family AT1G08290 55.132 7.10e-120 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr3g1245 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1245 - - gmx:100802773 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1245 3 26930110 26933394 Apr3g1245 3 26930110 26933394 ECH
Apr2g2103 2 26259902 26262592 Apr3g1245 3 26930110 26933394 PCT