Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1242 ATGGCGAGCCAAAGATTAGGAGAAACGGGTTTATCTGAGTCAGGGCCTTCAAGTCACCATGTCCCTTATGGAGTTCTTCATGGAATTAATACACCCACATCAAGCTTAATCAATCAAGGGTCAGCTTTTGATTTTGGAGAGCTGGAAGAGGCTATTGTTCTGCAAGGAATTCAAATAAGAAATGATGAAGCCAAAGCACCTTTATTCACCGGTAGGCCTGCAGCCACACTGGAAATGTTCCCTTCATGGCCAATGAGGTTCCAGCAAACACCAAGAGTAGGAAGTTCAAAGTCAGGGGGGGAAAGCACAGATTCAGGATCAGGAATGAATACTCTTTCAAGCAAAACGGAGCTCCAATTTGAAACCGAATCTCCCATAAGCATAAAAGCATCTTCTTCAGATCATCATCATCATCATCTGCAGCATCAACAGCAGAAACAACAACAACATCACCAACTTCAACTTCAACAGGAGACAGTAACTGATGCATCGAGAATAGGTCCATCACAATCAGCAGCAAAATCACAAGAAAAGAGGAAAGGGGCCAGTTCCACATCAGAGAAGCAACTTGATGCAAAGACACTGAGACGTTTGGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTTCAGCAACTTGAGTCAAGTAGATTAAAGCTCACCCACCTTGAACAAGACCTTCAACGAGCACGCTCTCAGGGGCTGTTTTTGGGTTGTGGTGGTGCTGGTGGGAATATAAACTCTGGAGCTGCAATGTTTGACATGGAGTATGCAAGATGGCTAGAAGATGACCACCGGCACATGGCGGAGCTCCGGACTGGGCTGCAGGCGCCGCTGTCGGAAGGCGAATTAAGAGTGGTTGTGGATGGATATCTGTCTCATTATGATGAAGTTTTCAGGCTGAAGGGGGTGGCAGCTAAAACGGATGTGTTTCATCTTATTAATGGCATGTGGACTTCCCCAGCTGAAAGATGCTTCCTATGGATAGGTGGTTTTAGACCATCAGATCTCATCGCAATGTTGATACAACAATTGGAGCCTCTAGCGGAGCAGCAAATCATGGGCATATATGGGCTCCGCCACTCATCACAGCAAGCTGAAGAGGCTCTCTCCCAAGGTCTTGAGCAGCTTCAGCAGTCTCTGGTTGACACCATCGCCGGTGGCCCCGCCGTTGACGGTGTCCAACAGATGATCGTTGCCATAGGCAAGCTTGCCAACCTTGAAGGATTTGTCAGTCAGGCTGATAATTTGAGGCAACAGACCCTTCACCAATTATGTCGATTACTGACAGTTCGACAAGCAGCACGGTGTTTTCTTGTGATTGGAGAGTATTATGGCCGTCTTAGAACCCTTAGTTCTCTTTGGGCATCAAGACCAAGAGAGACCTTAATCAGCGATGATAACTCATGCCAAACAACAACGGAATTGCAAATGGTTCAACCTTCTCAAAATCATTTCTCGAGCTTCTAA 1488 0.4637 MASQRLGETGLSESGPSSHHVPYGVLHGINTPTSSLINQGSAFDFGELEEAIVLQGIQIRNDEAKAPLFTGRPAATLEMFPSWPMRFQQTPRVGSSKSGGESTDSGSGMNTLSSKTELQFETESPISIKASSSDHHHHHLQHQQQKQQQHHQLQLQQETVTDASRIGPSQSAAKSQEKRKGASSTSEKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDLQRARSQGLFLGCGGAGGNINSGAAMFDMEYARWLEDDHRHMAELRTGLQAPLSEGELRVVVDGYLSHYDEVFRLKGVAAKTDVFHLINGMWTSPAERCFLWIGGFRPSDLIAMLIQQLEPLAEQQIMGIYGLRHSSQQAEEALSQGLEQLQQSLVDTIAGGPAVDGVQQMIVAIGKLANLEGFVSQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYGRLRTLSSLWASRPRETLISDDNSCQTTTELQMVQPSQNHFSSF* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1242 495 MobiDBLite consensus disorder prediction 88 195 - -
Apr3g1242 495 SMART brlzneu 189 265 IPR004827 GO:0003700|GO:0006355
Apr3g1242 495 Pfam bZIP transcription factor 192 234 IPR004827 GO:0003700|GO:0006355
Apr3g1242 495 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 196 211 IPR004827 GO:0003700|GO:0006355
Apr3g1242 495 CDD bZIP_HBP1b-like 193 244 - -
Apr3g1242 495 PANTHER TRANSCRIPTION FACTOR TGA9 64 474 - -
Apr3g1242 495 Pfam Seed dormancy control 273 348 IPR025422 GO:0006351|GO:0043565
Apr3g1242 495 Coils Coil 219 239 - -
Apr3g1242 495 MobiDBLite consensus disorder prediction 88 129 - -
Apr3g1242 495 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 191 235 IPR004827 GO:0003700|GO:0006355
Apr3g1242 495 MobiDBLite consensus disorder prediction 146 179 - -
Apr3g1242 495 SUPERFAMILY Leucine zipper domain 193 235 IPR046347 GO:0003700|GO:0006355
Apr3g1242 495 ProSiteProfiles DOG1 domain profile. 256 464 IPR025422 GO:0006351|GO:0043565
Apr3g1242 495 MobiDBLite consensus disorder prediction 180 195 - -
Apr3g1242 495 Gene3D - 192 241 - -
Apr3g1242 495 PANTHER TRANSCRIPTION FACTOR TGA9 64 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1242 Apr-Chr3 26887476 26896133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1242 175 495 bZIP Transcription Factor Family AT1G08320 76.087 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Apr3g1242 DOG1 6.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1242 K14431 - gmx:100101904 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1242 3 26887476 26896133 Apr3g1242 3 26887476 26896133 ECH