Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1238 ATGTACTATCTTCACCAACATCAAGGAAAGAACATTCATTCTTCTTCCAGAATGCCAATTCCTTCTGAAAGGCACATGTTCCTTCAAACTGGAAATGGGTCTGCAGATTCTGGACTTGTTCTATCAACGGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCTGTGCAGCAGTTAGGTGGAGCTGACAAGGCAACTCCAAAAACGGTGATGAAACTCATGGGAATTCCAGGGCTTACCTTGTATCATCTGAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAATTTGCACGGACAAAGTAACAATGTGACACACAAAATAAATGCGGCAACAGATGAAAGACTACCCGAAAACAATGGAACTCATATGAACAATTTAAACCTTCCCCCTCAGTCTAACAAAGATTTACACATAAGTGAGGCGCTGCAGATGCAAATAGAGGTTCAAAGAAGGCTAAATGAGCAACTTGAGGTGCAAAGACTCCTTCAGCTCCGGATAGAGGCTCAAGGAAAATACCTTCAGTCTGTGTTAGAAAAAGCTCAGGAAACACTTGGTAGACAGAATATGGGAGTAGTAGGACTTGAAGATGCTAAAGTTCAACTCTCAGAGCTAGTGTCCAAAGTGTCTTCTCAGTGCCTGAATTCAGCATTTTCTGAGCTGAAGGAGTTAAAAGGAATTACCCCTCAGCAAACACAAACCAACCAGCCAAATGACTGTTCTATGGATAGTTGCCTCACATCCTGTGAAGGACCACAAAAAGAACAAGAGATACAAAATGGTGGCATTAGCTTAAGACCCTTCAATCTTAACCTACGAAGCTGTGACCTCAAGTGGTGTGATACAATGAAAAACACCAACTTTCTTACCCCATTGGAAAAGAATGCAGAAAGAAGAAGCTACGTTTCCGAAAGAAGTCCAAGCAACTTGTCAATGAGCATTGGACTTGAAGGAGAATCAGAGAATGGCAACATGATGTTTTCTGAGAGAACAATCATTGGTGAATTCCAACAAAGAAACACCATTGGAACAGAATCAAAGAAACCAGTGGCTGATAATAAAATTTCTCAAGATTATAGATTGCCCTCTTACTTTGCAGGATCAAAACTGAACCTAACAGCCACTGAAGATAATGACACTACAACAAATTGTAAACAACTGGACTTGAATGGATTCAGTTGGAACTGA 1209 0.4078 MYYLHQHQGKNIHSSSRMPIPSERHMFLQTGNGSADSGLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKINAATDERLPENNGTHMNNLNLPPQSNKDLHISEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQSVLEKAQETLGRQNMGVVGLEDAKVQLSELVSKVSSQCLNSAFSELKELKGITPQQTQTNQPNDCSMDSCLTSCEGPQKEQEIQNGGISLRPFNLNLRSCDLKWCDTMKNTNFLTPLEKNAERRSYVSERSPSNLSMSIGLEGESENGNMMFSERTIIGEFQQRNTIGTESKKPVADNKISQDYRLPSYFAGSKLNLTATEDNDTTTNCKQLDLNGFSWN* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1238 402 Pfam MYB-CC type transfactor, LHEQLE motif 145 191 IPR025756 -
Apr3g1238 402 PANTHER MYB-RELATED PROTEIN 2 4 402 - -
Apr3g1238 402 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Apr3g1238 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Apr3g1238 402 Gene3D - 45 103 - -
Apr3g1238 402 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Apr3g1238 402 Coils Coil 147 167 - -
Apr3g1238 402 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Apr3g1238 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 402 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1238 Apr-Chr3 26857976 26860965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1238 78 402 G2-like Transcription Factor Family AT3G04030 50.147 5.02e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr3g1238 Myb_DNA-binding 2.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1238 - - gmx:100810396 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2095 2 26193342 26195983 Apr3g1238 3 26857976 26860965 PCT