Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1235 ATGGCGGAGGCGGAGGAGCTTCCCCGGGCTGTCGTGCGCCGCGTGGTGAAGGAAAAGCTCTCCCGTTGCTCCGACGACGGAGAAATTTCCGTCAACAAAGACGCCCTTCTCGCTTTCTCCGAAAGCGCTAGAATTTTCGTTCACTACCTCTCCGCTACGGCTAATGACATATGTAAGGAGTCAAAGAGGCAGATTATCAATGCTGAGGATGTTTTCAAGGCTCTTGAAGAGACTGAGTTCCCTGAGTTTGTTCGCCCTCTAAAAGCTTCTCTGGAAGAGTTTAGGAAGAAGAATGCTGGTAAAAGAGCTGCAGTGTCGAAGGGAAAGGGAAATGAGACGACAAAGAAAAGAAAGTCGGAAGCTGATGCATCTGATAAAGGTGAGGGTGGTGACGGCCAATGA 402 0.5 MAEAEELPRAVVRRVVKEKLSRCSDDGEISVNKDALLAFSESARIFVHYLSATANDICKESKRQIINAEDVFKALEETEFPEFVRPLKASLEEFRKKNAGKRAAVSKGKGNETTKKRKSEADASDKGEGGDGQ* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1235 133 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 2 128 - -
Apr3g1235 133 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 6 75 IPR003958 -
Apr3g1235 133 Coils Coil 58 78 - -
Apr3g1235 133 MobiDBLite consensus disorder prediction 98 133 - -
Apr3g1235 133 SUPERFAMILY Histone-fold 7 116 IPR009072 GO:0046982
Apr3g1235 133 MobiDBLite consensus disorder prediction 108 133 - -
Apr3g1235 133 Gene3D Histone, subunit A 1 131 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1235 7 120 CCAAT-HAP3 Transcription Factor Family AT3G53340 29.825 7.13e-12 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr3g1235 CBFD_NFYB_HMF 1.7e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1235 K02326 - gmx:100306382 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1235 3 26833937 26835570 Apr3g1235 3 26833937 26835570 ECH