Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1234 ATGCCACGGGGGAAGGCAAATTCTTCGTCAACTGCTAAGCCATCCGAGCCTGTGAAGCCAGTTGAATCTGATGAGAGGGTCGATTTTGATGAGGCAAATGATCCAGAGGAAGCAATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAAGGAGAAGAAGAGTATGTGGACGAAATAGAACCTGATGTGGAAGATGTGGAAGAGGTGGAGGAAGAGGAGGAGGACCCGGAGGAGGTAGAGGTAGAGGAAGAAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAGGTTGAAGAAGTGGATGAAGATGATGATGCCATGCAAAATCATAGCAGTGATGAAGCAAAGGTGGAAGATGATGATGAGAAGAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGCATCCCTCATGATGCATCAAATGAGGATTTGAAAGCATTTTGTGAGCATATTGGGGATGTTGCAGAGGTTCGGGTAATGAAGGGAAAGGATTCTTCAGAGAATAAGGGCTATGGTTTTGTGACTTTTAGAAGCGTGGAATTGGCTTCTAAAGCCATTGAGGAGCTGAATAATACTGAATTTAAGGGTAAAAAAATAAAATGTTCAACATCACAAGCAAAACATCGTCTTTTTATTGGCAATGTTCCTAGAAGCTGGGGTGAGGAAGATCTGAGGAAGATTGTAACTGTGACTGGACCTGGAGTTACTAGTGTGGAATTAGTCAAGGACATGAAGAACACCAACAATAACCGTGGCTTTGCTTTTATTGACTATTATAATCATGCATGTGCTGAGTATTCAAGGCAAAAGATGATGAGCCCAACATTTAAGCTTGGTGACAATGCTCCAACAGTGAGCTGGGCTGACCCTAAGAATGCTGAATCCTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAACCTGCCAAAGAATGTAACTCAAGAACAGCTGAAGAAGCTTTTTGAACGCCATGGGAAGATCACGAAGGTGGTTCTTCCACCTGCAAAGTCTGGACAGGAAAAGAACAGAATTGGCTTTGTACATTTTTCTGACAGGTCAAATGCTATGAAAGCGCTGAAAAACACTGAAAGATATGAATTAGAAGGTCAAGTTTTAGAGTGCTCTCTGGCAAAGCCACAGGCTGATCAGAAATCTGGAGGATCAAATACACAGAAGCCAGGATTGCTTCCAAGCTATCCATCACATGTTGGTTATGGTTTGGTTGGGGGTGCCTATGGTGCTCTTGGTGCAGGATATGCTGCTTCCAGTCTTGCACAGCCCTTGCTATATGGAAGAGGTCAAACTCCCAGTGGAATGGCCATGATGCCTATGCTTTTGGCTGATGGACGCATTGGATATGTCTTGCAACAACCAGGAATGCAGGCACAGACCCCACCCTCTCATCAGAGAGGTGGCAGGAGTGGCAGCAGCGGTAGTGGCAGCAGAAACTCTGGCAGTTCAAGTAAAGGAAGGCATAACAATGATGGTGGCCAAGGGCGCAGATACCGCCCATATTAG 1554 0.4498 MPRGKANSSSTAKPSEPVKPVESDERVDFDEANDPEEAMEEEIEYEEVEEGEEEYVDEIEPDVEDVEEVEEEEEDPEEVEVEEEEEEEEEEEEEEEEEVEEVDEDDDAMQNHSSDEAKVEDDDEKKKHAELLSLPPHGSEVYIGGIPHDASNEDLKAFCEHIGDVAEVRVMKGKDSSENKGYGFVTFRSVELASKAIEELNNTEFKGKKIKCSTSQAKHRLFIGNVPRSWGEEDLRKIVTVTGPGVTSVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGDNAPTVSWADPKNAESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFSDRSNAMKALKNTERYELEGQVLECSLAKPQADQKSGGSNTQKPGLLPSYPSHVGYGLVGGAYGALGAGYAASSLAQPLLYGRGQTPSGMAMMPMLLADGRIGYVLQQPGMQAQTPPSHQRGGRSGSSGSGSRNSGSSSKGRHNNDGGQGRRYRPY* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1234 517 SUPERFAMILY RNA-binding domain, RBD 136 304 IPR035979 GO:0003676
Apr3g1234 517 MobiDBLite consensus disorder prediction 1 126 - -
Apr3g1234 517 SUPERFAMILY RNA-binding domain, RBD 310 412 IPR035979 GO:0003676
Apr3g1234 517 SMART rrm2_1 314 387 IPR003954 GO:0003676
Apr3g1234 517 SMART rrm2_1 140 213 IPR003954 GO:0003676
Apr3g1234 517 MobiDBLite consensus disorder prediction 1 16 - -
Apr3g1234 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 391 IPR000504 GO:0003723
Apr3g1234 517 Gene3D - 56 219 IPR012677 -
Apr3g1234 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 301 IPR000504 GO:0003723
Apr3g1234 517 MobiDBLite consensus disorder prediction 472 517 - -
Apr3g1234 517 CDD RRM_SF 141 213 - -
Apr3g1234 517 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 75 - -
Apr3g1234 517 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 66 491 - -
Apr3g1234 517 Coils Coil 69 105 - -
Apr3g1234 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 282 IPR000504 GO:0003723
Apr3g1234 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 384 IPR000504 GO:0003723
Apr3g1234 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Apr3g1234 517 MobiDBLite consensus disorder prediction 472 505 - -
Apr3g1234 517 MobiDBLite consensus disorder prediction 27 110 - -
Apr3g1234 517 SMART rrm1_1 220 297 IPR000504 GO:0003723
Apr3g1234 517 SMART rrm1_1 140 213 IPR000504 GO:0003723
Apr3g1234 517 SMART rrm1_1 314 387 IPR000504 GO:0003723
Apr3g1234 517 Gene3D - 220 300 IPR012677 -
Apr3g1234 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Apr3g1234 517 PANTHER RNA RECOGNITION MOTIF 66 491 - -
Apr3g1234 517 PANTHER RNA RECOGNITION MOTIF 1 75 - -
Apr3g1234 517 MobiDBLite consensus disorder prediction 111 126 - -
Apr3g1234 517 Gene3D - 302 418 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1234 Apr-Chr3 26827668 26832954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1234 146 396 Eukaryotic Initiation Factors Gene Family AT4G34110 25.714 1.02e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1234 K13161 - gmx:100806658 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1234 3 26827668 26832954 Apr3g1234 3 26827668 26832954 ECH