Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1225 ATGGAAGATCATCCACCTGGGTTTCGTTTCTTCCCAACGGAAGAAGAGCTAGTTGGCTTCTACCTACACAACAAACTAGAAGGCAAAAGAAACTCCATAGACAGAGTTATCCCAGTTATTGACATCAATGGCGTAGAACCGTGGAACCTTCCAACACTTGCAGGGGAGCTTTGTCGTGGGGACACGGAGCAGTGGTTTTTCTTTACACCTGGTCAAGAGAGAGAAGCCAGAGGAGGTAGACCCAGCAGAACCACGTCTTGTGGGTATTGGAAAGCCACTGGTTCTCCTGGCTATGTTTATTCTTCTGATAACAAAGTCATTGGAATGAAAAAATCCATGGTATTCTACAAAGGAAAAGCTCCTACTGGTAGGAAAACCAAATGGAAGATGAATGAATATAGAGCCATCCAAGTCCCCGACAAATCCATCACTTCCATCCCTCAGTTGAGAAGGGAATTCAGCCTGTGCCGGGTTTATGTCATATCGGGAAGCTTTCGATCATTTGATCGACGTCCATCAGAGAATGGAAGAGTGGAGAACAGGTTTTCTGCGGCACATGCTAAACACGCTGCGAGAATCGATGGTTCAAGTTCTTCTCATACTACTTCTCACTTAGAGGGGGTTCATACCGCTACACTGACAGAGCCTGGAGAATCATGTAGCACAAATTGGAATGTGAATTATAATGAGGTCAAACTCCAAGAACCGTTGTGGGAGTTCGAATGGGAACAATTCAATTGGGTCTAA 747 0.4511 MEDHPPGFRFFPTEEELVGFYLHNKLEGKRNSIDRVIPVIDINGVEPWNLPTLAGELCRGDTEQWFFFTPGQEREARGGRPSRTTSCGYWKATGSPGYVYSSDNKVIGMKKSMVFYKGKAPTGRKTKWKMNEYRAIQVPDKSITSIPQLRREFSLCRVYVISGSFRSFDRRPSENGRVENRFSAAHAKHAARIDGSSSSHTTSHLEGVHTATLTEPGESCSTNWNVNYNEVKLQEPLWEFEWEQFNWV* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1225 248 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Apr3g1225 248 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Apr3g1225 248 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Apr3g1225 248 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 248 - -
Apr3g1225 248 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Apr3g1225 248 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1225 Apr-Chr3 26760796 26762037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1225 2 247 NAC Transcription Factor Family AT3G44350 52.846 1.87e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr3g1225 NAM 3.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1225 - - gmx:100781321 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1225 3 26760796 26762037 Apr3g1225 3 26760796 26762037 ECH
Apr2g2084 2 26131068 26132102 Apr3g1225 3 26760796 26762037 PCT