Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1208 ATGTCGGGCTCGCGAGCTCCTCCTGCCGCCGCCGCCGCCTCCTCGAACCCGCCGGAGAAGATCATGCAGTCCATGAAACGCCAACTTCCGTTCTCCTCCATGAAACCGCCGTTCGTGGCTGCCGGAGATTACCATCGCTTCGCTCCCGACCACCGCCGAAACCTCGACCAGGAGCCCGAGGCCATCGTCATTAAGACTCCCCAACTGAAGCGGAAGAGTGAAACAGCTGAATTTGAAGCTGATTCTGGTGATAGGACGACTCCTGGATCCACTGAAGCAGCTAATAGTCCTTTTCAGACACCGGTATCAGGAAAGATGGGAAAGGGAGGCAAATCCTCTAGGCTGACAAAATGCAACAGACCTGGAACTCAAACCCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGCTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATCCTTGATCTGAATAAAGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTCAAGAACAGGATTCAATGGAAGGGACTGGATGTTTCAAGACCAGGGGAGGCTGATGATAGTTTTGCTAGTTTACAGGCAGAAGTTGAAAATTTAACAATAGAGGAGCGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGATTACGGGGTCTTAGTGAAGATGAAAACAATGAAAAGTTGCTTTTTGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACATTGATAGCAATTAAAGCTCCACATGGCACCACTTTGGAGGTCCCTGATCCAGATGAGGCTGTTGATTATCCGCAGAGGAGATACAGGATTGTCCTCAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAAAAGTTTGAAGAGATTAATGGGGTTGATGTTGCACCCAAATTTCCATCGAGTCCAGAACTTAACAAGCATCAATCAACAGTGGTCCCAGAGGATAGAGGGAAGGACATAGAAGTGCAGGGACAAGAAGATGGTCATGGGTCTAGTTCAGATTTTACTACCTCTCAGGATTTTGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTCGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGACCTGGATACACTACAAGAAGATTATTGCATGACTCGTGAGCACACTACGTCCCCAAGTCATCCGACCCCAAGTCAACCTTCAAACGTTGGTGAATTGTCTTCTGCATCTAACCCTACTGGAGGTTGA 1413 0.4593 MSGSRAPPAAAAASSNPPEKIMQSMKRQLPFSSMKPPFVAAGDYHRFAPDHRRNLDQEPEAIVIKTPQLKRKSETAEFEADSGDRTTPGSTEAANSPFQTPVSGKMGKGGKSSRLTKCNRPGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTIEERRLDEQIREMQERLRGLSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDVAPKFPSSPELNKHQSTVVPEDRGKDIEVQGQEDGHGSSSDFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPGVEWNDLDTLQEDYCMTREHTTSPSHPTPSQPSNVGELSSASNPTGG* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1208 470 MobiDBLite consensus disorder prediction 49 142 - -
Apr3g1208 470 PANTHER TRANSCRIPTION FACTOR E2F 22 452 IPR015633 GO:0000978|GO:0006357
Apr3g1208 470 MobiDBLite consensus disorder prediction 116 142 - -
Apr3g1208 470 SMART E2F_TDP_2 145 210 IPR003316 GO:0005667|GO:0006355
Apr3g1208 470 CDD E2F_DD 221 327 IPR032198 GO:0046983
Apr3g1208 470 PANTHER TRANSCRIPTION FACTOR E2FB 22 452 - -
Apr3g1208 470 MobiDBLite consensus disorder prediction 49 81 - -
Apr3g1208 470 Pfam E2F/DP family winged-helix DNA-binding domain 147 210 IPR003316 GO:0005667|GO:0006355
Apr3g1208 470 MobiDBLite consensus disorder prediction 1 23 - -
Apr3g1208 470 MobiDBLite consensus disorder prediction 438 470 - -
Apr3g1208 470 SUPERFAMILY "Winged helix" DNA-binding domain 145 208 IPR036390 -
Apr3g1208 470 Gene3D - 139 212 IPR036388 -
Apr3g1208 470 SUPERFAMILY E2F-DP heterodimerization region 224 327 IPR037241 -
Apr3g1208 470 MobiDBLite consensus disorder prediction 355 371 - -
Apr3g1208 470 Gene3D - 217 327 - -
Apr3g1208 470 Pfam E2F transcription factor CC-MB domain 226 326 IPR032198 GO:0046983
Apr3g1208 470 MobiDBLite consensus disorder prediction 340 383 - -
Apr3g1208 470 MobiDBLite consensus disorder prediction 84 102 - -
Apr3g1208 470 MobiDBLite consensus disorder prediction 439 470 - -
Apr3g1208 470 Coils Coil 161 181 - -
Apr3g1208 470 Coils Coil 223 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1208 Apr-Chr3 26620143 26626596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1208 24 469 E2F-DP Transcription Factor Family AT5G22220 57.563 2.86e-162 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Apr3g1208 E2F_CC-MB 2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1208 K06620 - gmx:100819817 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1208 3 26620143 26626596 Apr3g1208 3 26620143 26626596 ECH