Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1198 ATGGCTACGTACTTTCATGGCAGCAATTCAGAAATCCAATCCTCCGCAGAAGGGTTGCAGACACTTTACCTTATGAACCCAAACTACGTACCTTACTCTGATGCGGCGCAACACCCAACACAAAACATGCTCCTCGTCAATCCCAACACCACTAATAATACTACTACTATTCCCTCCCACGCGCTCAATCTCGCCAATTTCTCCCACGCGCCACCATCTCCGTCACCCAATAATCACCATCGTCATCATGAACAACAACCCCTAATTGGGGTCACCTTTCCCTCCTCAAACATCCTCGGATCCAACACCACCGATGACCCCACCCGGCCGGCCTTCCTTGGACAACCCGAAATCCCTGCCTTTCACGGCTTAACTGCTACCGCCGCCACTACGGCGGCAGTTCCTCGTGTTCACTATAACTTATGGGGTTCCATAATGGATCAATCTGTGTCAACAGCGGCGGTAGCCGCTGTACACACTCCGTCTAATAGCGCGGGGTGTGTAGCTGCCGTCACTAATGTTTCGAGGCAGATTGGTTTTCATAGGCCTAATAACCAATTGTCACTAAGCCTTTCATCGCAACACACACCTTACCGGTCGTTCTCCGGGGAGGTTCAGGCTATATCTCCGGCGAGCCGTGGCGGGGATGATATGCGCGTGGTGAACAATGGGGTTTCGAGTATGCATAGCGTGGTTTTAGGATCTAAGTATTTGAAAGCGGCTCAGGAGGTTCTCGATGAGGTTGTGAATGTGGGTAAGGGAATCTCCAAAGAGGAAGAATCTATGGAGGGGGCTAAGAGAGAGAAGATGAAAGGGAATATTGAATCCACTTCTCGGGTTGGTGATGGTTCGAGTGGTGGAGGAGAAAGTAGTGGTGGCAAGCAAGGAGCTGAACTCAGCACTGCACAGAGACAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTGAACATGTTGGATGAGGTGGAGCAAAGGTACCGACAATATCATCACCAAATGCAAATCGTGATATCATCATTTGAGCAAGTAGCGGGCATTGGGGCGGCAAAATCTTACACTGCCCTTGCTTTAAAGACCATCTCAAAGCAATTCAGGTGTCTCAAAGATTCAATCTCTTCACAAATCAGGACAACGACCAAGACATTGGGTGAAGATGATTGCTTAGGAGTTAAAGTAGAAGGTTCGAGGCTTAGGTACGTTGACCATCATCTACGACAACAACGTGCATTACAACAGCTTGGAATGATTCAACACAATGCTTGGAGACCCCAAAGAGGCTTGCCTGAACGCGCTGTTTCCATTCTTCGTGCTTGGCTTTTTGAACATTTTTTGCACCCCTATCCTAAGGACTCCGATAAGGTTATGCTTGCAAAACAAACGGGACTTACCCGAAGTCAGGTGTCTAACTGGTTTATAAATGCCCGAGTTCGGCTTTGGAAACCAATGGTTGAAGAAATGTACTTGGAGGAGGTAAAGCAAGAGGATAATGGCTCCCAAGATAACAACACTAATAGGTCAAAAGAATCGGGCAAAGAGTTATGGACAGAAGCTAGTGCTGCCCAAGATTCAAGTGCCATGAGACTTGATCAGATTAATGTTTTTCAGTCAAAAGCAGAAAGCTTCAACAACCAAACCACTTCTCCAACTGAGATCTCTAACTCTAATTCAATGTCAACATCTCCAATGGGAGGAGAAGGAGGAGGAGGGTCTCTCCAATCCCAATCTGGTTTCCATCTTCCTGGAATGCAAAGTCCAAAAAGGCCCAGAAGTGCTTCTGAACTGCAGAACTCTCCAGGTAGCATACTTTCCGTGGACATGGAAATGAAGTCTCACGGAGAGGCAAATAATAGAGATTCCAACACAAAGTTTGGCATTGAAAACCATGGTGGGGGTTTTGGAGCATTCTCAATGGAAGACATTGGAAGGTTTAATGTCACTGAGCAATTAGCTCCAAGGTTTCATGGAAATGGTGTTTCTCTCACTCTTGGACTCCCTCACAGTGAGACCCTCCCTCTCTCCGGAACCCAACACGGATTCCTCTCACAGAATATGCATTTAGGAATGGGAAACAATGAAAATGAGTTTTGTGGTGCCATTAACACTCCACCTTCTTCTCATTCAGGCACAAGTTATGAGAGCATTGATATTCAAAACAGAAAGAGGTTTGCTGCTGCACAGTTGTTGCGTGATTTCGTGGCCTGA 2199 0.4688 MATYFHGSNSEIQSSAEGLQTLYLMNPNYVPYSDAAQHPTQNMLLVNPNTTNNTTTIPSHALNLANFSHAPPSPSPNNHHRHHEQQPLIGVTFPSSNILGSNTTDDPTRPAFLGQPEIPAFHGLTATAATTAAVPRVHYNLWGSIMDQSVSTAAVAAVHTPSNSAGCVAAVTNVSRQIGFHRPNNQLSLSLSSQHTPYRSFSGEVQAISPASRGGDDMRVVNNGVSSMHSVVLGSKYLKAAQEVLDEVVNVGKGISKEEESMEGAKREKMKGNIESTSRVGDGSSGGGESSGGKQGAELSTAQRQELQMKKSKLVNMLDEVEQRYRQYHHQMQIVISSFEQVAGIGAAKSYTALALKTISKQFRCLKDSISSQIRTTTKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKQEDNGSQDNNTNRSKESGKELWTEASAAQDSSAMRLDQINVFQSKAESFNNQTTSPTEISNSNSMSTSPMGGEGGGGSLQSQSGFHLPGMQSPKRPRSASELQNSPGSILSVDMEMKSHGEANNRDSNTKFGIENHGGGFGAFSMEDIGRFNVTEQLAPRFHGNGVSLTLGLPHSETLPLSGTQHGFLSQNMHLGMGNNENEFCGAINTPPSSHSGTSYESIDIQNRKRFAAAQLLRDFVA* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1198 732 MobiDBLite consensus disorder prediction 538 596 - -
Apr3g1198 732 Pfam Homeobox KN domain 437 476 IPR008422 GO:0003677|GO:0006355
Apr3g1198 732 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 684 - -
Apr3g1198 732 MobiDBLite consensus disorder prediction 538 579 - -
Apr3g1198 732 MobiDBLite consensus disorder prediction 277 302 - -
Apr3g1198 732 SMART prehox3 226 372 IPR006563 -
Apr3g1198 732 MobiDBLite consensus disorder prediction 489 520 - -
Apr3g1198 732 SUPERFAMILY Homeodomain-like 421 486 IPR009057 -
Apr3g1198 732 ProSiteProfiles 'Homeobox' domain profile. 417 480 IPR001356 GO:0003677
Apr3g1198 732 Coils Coil 304 331 - -
Apr3g1198 732 MobiDBLite consensus disorder prediction 92 109 - -
Apr3g1198 732 SMART HOX_1 420 484 IPR001356 GO:0003677
Apr3g1198 732 Pfam Associated with HOX 231 371 IPR006563 -
Apr3g1198 732 Gene3D - 416 494 - -
Apr3g1198 732 MobiDBLite consensus disorder prediction 258 302 - -
Apr3g1198 732 MobiDBLite consensus disorder prediction 92 115 - -
Apr3g1198 732 MobiDBLite consensus disorder prediction 258 275 - -
Apr3g1198 732 CDD homeodomain 420 481 IPR001356 GO:0003677
Apr3g1198 732 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 7 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1198 Apr-Chr3 26481421 26486261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1198 1 732 Homeobox Transcription Factor Family AT2G35940 42.288 3.29e-133 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Apr3g1198 POX 2.4e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1198 - - gmx:100786883 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1198 3 26481421 26486261 Apr3g1198 3 26481421 26486261 ECH
Apr2g2062 2 25938589 25943557 Apr3g1198 3 26481421 26486261 PCT