Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1196 ATGGCTGAAATTGAAATTCCTCAATATTTTGTGTGTCCCATTTCGTTTCAGATCATGAAGGACCCAGTGACAGCTATGACGGGCATAACATACGACAGAGAAAGCATAGAGCGATGGTTGCTGAAGGCCAAAGATTGTGTGTGCCCAGTTACCAAACAACCGTTGCCAAGAAGCTCTCAATACTTAACCCCTAACCACACACTTAGAAGGCTAATCCAAGCATGGTGTTCATCAAACACAGCCAATGGTGTTGATCAAATCCCAACTCCAAAAACCCCTTTAAACAATATCCAACTTCAGAAGCTTGTGAAGGATCTTGAGGTTCCTCATTGTTACCAAACATCGTTGGAGAAGTTGCATGCCCTTGCTACAGAAAGCGAGAGGAACAGAACGTGCATGAATGAGGAAGGGGTAGCCAAGGCCATGGTGAAGGTGATTAACAAGAATTTCAAAGAAGGGAACACCACTTGCATAGAAGAAGCTATGAGAATTGTTCATCTTCTTTGGAATAACCAAGCCATGAGGATGATGACCAACAACAACATGAAAAATCTTGTTGGAGAAAACTTGGACTTCATCAACTCTTTGACTTGGGTTTTGAAGCTTCATTTAAATAACAACATCAAGTTGGTAAATGAAGCAGTGCCCCTTTTGAAGTTGACCATTGAGGTTGCTGATTCAACCTTGTTAGGGAGTTTAAGCCTTGAATTCTTCAAAGAAATTGTTAAGGTATTAAAAAAGAGAGCACTCTCTCAACAAGCTATTAAGTCTGCTTTGCATGTGCTCATAGGAACTAGTTCTTTGGGTAGAAACAGAATGAAGATTGTTGAAGCAGGTGCAGTTTTGGAACTCATAGAGCTTGATCTTGAAAAGCCAGAGAAGAACATAACAGAACTCATATTCAACCTTTTGGCACATCTTTGTTCTTGTGCTGATGGAAGAGAGCAATTTCTAAGACATGCTGCGGGTATAGCATTGGTTTCAAAGAGGGTTTTGAGGGTTTCTGCTGCAACTGATGATAGAGCAATTCATATATTTTCAGTGATTGCAAGGTTTTCAGCATCAAATGAGGTTGTTCTAGAGATGTTGAGGGTCGGAGCCGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGCTTCGTATTTGAAAGAGAAAGCAAGGGACATCCTTAGGTTACACTCCAAAGCTTGGAATAATTCTCCTTGCATACAAGTGTATTTGTTAACTAGGCACCAAAGGTGA 1245 0.4088 MAEIEIPQYFVCPISFQIMKDPVTAMTGITYDRESIERWLLKAKDCVCPVTKQPLPRSSQYLTPNHTLRRLIQAWCSSNTANGVDQIPTPKTPLNNIQLQKLVKDLEVPHCYQTSLEKLHALATESERNRTCMNEEGVAKAMVKVINKNFKEGNTTCIEEAMRIVHLLWNNQAMRMMTNNNMKNLVGENLDFINSLTWVLKLHLNNNIKLVNEAVPLLKLTIEVADSTLLGSLSLEFFKEIVKVLKKRALSQQAIKSALHVLIGTSSLGRNRMKIVEAGAVLELIELDLEKPEKNITELIFNLLAHLCSCADGREQFLRHAAGIALVSKRVLRVSAATDDRAIHIFSVIARFSASNEVVLEMLRVGAVSKLCMVMQADCASYLKEKARDILRLHSKAWNNSPCIQVYLLTRHQR* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1196 414 Gene3D - 98 401 IPR011989 -
Apr3g1196 414 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Apr3g1196 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Apr3g1196 414 SUPERFAMILY ARM repeat 110 392 IPR016024 -
Apr3g1196 414 PANTHER WDSAM1 PROTEIN 3 411 IPR045185 GO:0061630
Apr3g1196 414 SUPERFAMILY RING/U-box 4 83 - -
Apr3g1196 414 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Apr3g1196 414 CDD RING-Ubox_PUB 10 53 IPR045210 -
Apr3g1196 414 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 411 - -
Apr3g1196 414 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1196 Apr-Chr3 26466724 26467968 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1196 3 404 U-box Gene Family AT2G35930 40.148 8.41e-101 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1196 - - gmx:100811293 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1196 3 26466724 26467968 Apr3g1196 3 26466724 26467968 ECH
Apr2g2060 2 25930102 25931349 Apr3g1196 3 26466724 26467968 PCT