Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1195 ATGGATGAAATGGATGTTCCTTCCCTTTTTCTCTGCCCCATTTCCTTGGAGCTCATGAGAGATCCTGTCACAGTATGCACAGGAATCACCTACGACAGAGAGAACATAGAGAGATGGTTATTTTTATGCAACAACAACACATGCCCTGTAACTAAGCAGTCACTCATACACACAGATCTCACCCCAAACCACACTCTCCAACGTTTGATCCAAGCTTGGTGCACCCATAATGCCTTTTTTGAAATTGAAACTATTTCTTCAACTTCAAATCCAACCTTTGACAAATCCCAGGTCGTCAAACTCCTCTTAGAAGCAAAGAAGTTCCCAGAAAAACAGCTCATGTGTCTTAGAATGCTTCAATCTCTTGCTTTTGAAAGTGAAAGTAACAAAACCTGTTTGGAGTCTGTAGGGGTGATAGATTTTTTGGCTTCTACCATGATGATGAGCAATAGCCAAGACGGTTCAAATTCAACTGTTATGAGTAGTGAAGCAGCTATTGACGTCTTGTTTCACCTAAAGCCTTGTGAAGATCAGCTTAAGAACCTAATGGACAACAAGGGTATTCAATTTATTGAGTCTTTGTTTCAGGTTTTGAAGTTTGGAAACTACCAATCTCGAGCTTATGCAACTACGCTTTTGAAGTCAGCATTTGAGGTGGCTGGTCCAACCCAATTGAACAGTGTAAGAATAGAACTTTTTGTGGAGATATTAAGAGTGTTAACGGATCAGGTTTCAGACCAAGCTTCTAAGGTAGCATTGAAGCTTCTTGTGGAGTTGTGTTCATTGGGTAGGAACAGAATCAAAGCTGTTGAGGGTGGTGCTGTTTTAGTCCTCATTGAGCTTCTTCTTGATGTTTCTGAAAGAAGAGAATGTGAACTCATGTTGTTGGCTTTGGACAGACTTTGTGGCTGTGCAGAAGGAAGAGCTGAGTTGTTGAACCATGGAGCTGGATTGGCGATTGTGTCCAAGAAAATTTTGAGGGTTTCTCATGTGGCAAGTGATAGAGGGGTTAAAATTTTGACCTCCATTTGTAGGTATTCAGCTACACCTAGAGTGCTTCATGAAATGTTGCTATTTGGAGCTGTGTCAAAGTTGTGTTTGGTGCTTCAAGTGGAAGGTAGTTTCAAGGCTAAGGAGAGGGCTAAAGAGACACTCAAATTGCACTCTATGGTTTGGAGGAATTCCCCATGTATTCCAGATCCTTTGCTTGCATACTATCCATGA 1224 0.4134 MDEMDVPSLFLCPISLELMRDPVTVCTGITYDRENIERWLFLCNNNTCPVTKQSLIHTDLTPNHTLQRLIQAWCTHNAFFEIETISSTSNPTFDKSQVVKLLLEAKKFPEKQLMCLRMLQSLAFESESNKTCLESVGVIDFLASTMMMSNSQDGSNSTVMSSEAAIDVLFHLKPCEDQLKNLMDNKGIQFIESLFQVLKFGNYQSRAYATTLLKSAFEVAGPTQLNSVRIELFVEILRVLTDQVSDQASKVALKLLVELCSLGRNRIKAVEGGAVLVLIELLLDVSERRECELMLLALDRLCGCAEGRAELLNHGAGLAIVSKKILRVSHVASDRGVKILTSICRYSATPRVLHEMLLFGAVSKLCLVLQVEGSFKAKERAKETLKLHSMVWRNSPCIPDPLLAYYP* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1195 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Apr3g1195 407 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Apr3g1195 407 PANTHER WDSAM1 PROTEIN 2 407 IPR045185 GO:0061630
Apr3g1195 407 PANTHER OS11G0573500 PROTEIN 2 407 - -
Apr3g1195 407 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Apr3g1195 407 SUPERFAMILY ARM repeat 108 385 IPR016024 -
Apr3g1195 407 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Apr3g1195 407 CDD RING-Ubox_PUB 10 53 IPR045210 -
Apr3g1195 407 SUPERFAMILY RING/U-box 3 79 - -
Apr3g1195 407 Gene3D - 93 391 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1195 Apr-Chr3 26450310 26451533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1195 2 407 U-box Gene Family AT2G35930 49.512 1.24e-140 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1195 - - var:108340160 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2059 2 25915544 25916755 Apr3g1195 3 26450310 26451533 PCT