Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1189 ATGGGTGTGTCAGGGAAGTGGATTAAAGCATTGGTTGGTATAAAGAAATCAGATAAGTCCGAGTCCTCAGAGAAGGATGGAAATAAGTTTGGCAAGTTTCGGCATCGGAGAAAGCATTCCATCGAAATTGACAAAAGTAAACTTCAAAATGAGTTTAGCAATAATGGTACTCCACCTATTGGAGATGCTGACCCCCCTTCAAACCTTGATGCTCATTATTCACCTTCTACTTCACAACAAGCACAAGATGCTGCACATAATCATCAAATCATGAGGGAAGAATGGGCTGCAACACGTATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCACTACGAGCTTTGAAAGGATTGGTAAGGCTTCAGGCCCTTGTAAGAGGTCATGCAGTAAGAAAACAAGCTGCAATAACTCTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAAGCTCGTGTTCGAGCAAGGCGCGTTCGCTTGGCATTGGAAAATCAAACAGCACAAGAGAAACTGCAGCAACAGCTTGCAAATGAGGCCCGTGTTCGTGAAACTGAAGAAGGTTGGTGTGATAGTGTGGGATCTGTTGAAGAAATTCAAGCCAAAATATTAAAGAGACAGGAGGCTGCAGCCAAACGTGAGAGAGCCATGGCATATGCTCTAGCCCATCAGTGGCAAGCAGGATCAAGGCAGCAGGCTGTTTCCTCTGGATTTGAACCTGATAAAAATAGTTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTACGTCCTTGGGAGAATCGCTTTCTTGACACTAATATGAGAGATGGAGCAATGGTTGATGCAAATGTGGCTATAGATGGTAAAAATGGGATCAAACCTCAGTTAAAATCAGTTAACACAAAATCAATTCCATCGAATATCCATCCAAACCTTGCCAATCAGAAAACTGGTCCTTCTCTTTCTGATGGCTGTGATTCCTCACCTAGTAAGTCAGCAGGTTTGCTAGAGTCATCAAACACAAAGTCTGTTAAACCAAAGTCTAATGCAAATGTTCAAAATCCTATTGAAGATGCCAACTCAAAACCTGAAATTCAAAGATCTCATAGTAATCCAAAGGAGAGAACTGCACCAGTAGACAAGCAGGCAAAGAAAAGATTATCCCTGCCTAACAATGCAGGAGGTCCTGGGGCTCAAACAGCAAAAAATTCTACTAGAACGACGCGTGGCGTGCAAAAGCCTATGAGGGATAAACCTAAATTCAATGGAGGGGGGGATATGCATATTACTAAATCTGTTCCACAGCCCACAGTTATGTAG 1296 0.4313 MGVSGKWIKALVGIKKSDKSESSEKDGNKFGKFRHRRKHSIEIDKSKLQNEFSNNGTPPIGDADPPSNLDAHYSPSTSQQAQDAAHNHQIMREEWAATRIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALENQTAQEKLQQQLANEARVRETEEGWCDSVGSVEEIQAKILKRQEAAAKRERAMAYALAHQWQAGSRQQAVSSGFEPDKNSWGWNWLERWMAVRPWENRFLDTNMRDGAMVDANVAIDGKNGIKPQLKSVNTKSIPSNIHPNLANQKTGPSLSDGCDSSPSKSAGLLESSNTKSVKPKSNANVQNPIEDANSKPEIQRSHSNPKERTAPVDKQAKKRLSLPNNAGGPGAQTAKNSTRTTRGVQKPMRDKPKFNGGGDMHITKSVPQPTVM* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1189 431 MobiDBLite consensus disorder prediction 14 88 - -
Apr3g1189 431 ProSiteProfiles IQ motif profile. 117 144 IPR000048 GO:0005515
Apr3g1189 431 PANTHER IQ-DOMAIN 5-RELATED 2 396 - -
Apr3g1189 431 Pfam IQ calmodulin-binding motif 95 114 IPR000048 GO:0005515
Apr3g1189 431 MobiDBLite consensus disorder prediction 354 374 - -
Apr3g1189 431 MobiDBLite consensus disorder prediction 286 353 - -
Apr3g1189 431 MobiDBLite consensus disorder prediction 284 431 - -
Apr3g1189 431 MobiDBLite consensus disorder prediction 70 86 - -
Apr3g1189 431 ProSiteProfiles IQ motif profile. 93 121 IPR000048 GO:0005515
Apr3g1189 431 MobiDBLite consensus disorder prediction 14 30 - -
Apr3g1189 431 Coils Coil 156 176 - -
Apr3g1189 431 SMART iq_5 115 136 IPR000048 GO:0005515
Apr3g1189 431 SMART iq_5 92 114 IPR000048 GO:0005515
Apr3g1189 431 MobiDBLite consensus disorder prediction 47 61 - -
Apr3g1189 431 Gene3D - 94 135 - -
Apr3g1189 431 ProSiteProfiles IQ motif profile. 142 169 IPR000048 GO:0005515
Apr3g1189 431 MobiDBLite consensus disorder prediction 385 402 - -
Apr3g1189 431 PANTHER IQ-DOMAIN 5-RELATED 2 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1189 Apr-Chr3 26384392 26390558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1189 1 394 IQD Protein Family AT3G22190 59.649 6.22e-122 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1189 - - lang:109325503 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1189 3 26384392 26390558 Apr3g1189 3 26384392 26390558 ECH