Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1188 ATGTTTGGAAGAGCACCAAAGAAGAGCGACAACACCAGGTACTATGAAATCCTTGGCGTCTCCAAGAACGCTTCGCCGGATGATTTGAAGAAGGCTTACAAAAAAGCCGCCATTAAGAATCATCCCGACAAGGGTGGTGATCCCGAGAAGTTTAAAGAGCTGGCTCAAGCTTATGAGGTTCTGAGTGACCCTGAGAAGCGTGAAATCTATGATCAATACGGTGAAGATGCTCTTAAGGAAGGAATGGGTGGTGGTGGTGGCCATGACCCGTTTGATATCTTTTCCTCTTTCTTTGGAGGGAGTCCGTTTGGAGGTGGTAGTAGTCGAGGTCGGAGGCAGAGGCGTGGAGAAGATGTGGTTCACCCTCTCAAGGTCTCTCTGGAGGATCTTTACCTTGGGACATCCAAGAAGCTCTCCCTGTCCAGAAATATCATTTGCTCTAAGTGCAGTGGCAAGGGTTCTAAATCTGGGGCTTCAATGAAGTGTGCCGGCTGTCAAGGAACTGGTATGAAGGTTTCCATTAGACACCTTGGTCCGTCCATGATTCAGCAGATGCAGCATGCTTGCAATGAATGTAAGGGTACTGGAGAAACTATTAGTGATAGAGACCGCTGCCCACAGTGCAAGGGAGAGAAGGTTGTGCAAGAGAAGAAAGTTCTTGAGGTTATTGTGGAGAAGGGAATGCAGAATGGGCAGAAGATTACATTCCCTGGTGAAGCTGATGAGGCGCCAGACACAATTACTGGGGATATCGTCTTTGTGCTTCAGCAGAAGGAACATCCAAAATTTAGAAGAAAGGCTGAAGACCTTTTTGTTGAGCACACACTGTCCCTCACTGAGGCTTTATGTGGCTTCCAATTTGTGCTGACTCACTTGGATGGACGTCAACTTCTTATCAAATCAAACCCTGGGGAAGTTGTCAAGCCTGATTCATACAAGGCTATTAATGATGAGGGAATGCCAATGTACCAGAGGTCATTTATGAAGGGAAAGCTTTATATTCACTTCACAGTGGAATTCCCTGATTTTCTAAATCCTGATCAGGTTAAGGCCTTGGAGGCTGTTCTGCCACCAAAACCTTCTTCACAGTTGACAGACATGGAGCTGGATGAGTGTGAGGAGACTACACTTCATGATGTCAATATGGAGGAGGAGACAAGGAGGAAGCAGCAAGCTCAGCAGGAGGCTTATGAGGAGGATGATGATATGCCTGGTGGCGCACAGAGGGTACAGTGCGCCCAGCAGTAG 1248 0.4736 MFGRAPKKSDNTRYYEILGVSKNASPDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNIICSKCSGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETISDRDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFRRKAEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRSFMKGKLYIHFTVEFPDFLNPDQVKALEAVLPPKPSSQLTDMELDECEETTLHDVNMEEETRRKQQAQQEAYEEDDDMPGGAQRVQCAQQ* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1188 415 CDD DnaJ 14 63 IPR001623 -
Apr3g1188 415 Gene3D - 146 212 - -
Apr3g1188 415 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 143 215 IPR036410 -
Apr3g1188 415 SUPERFAMILY HSP40/DnaJ peptide-binding domain 112 270 IPR008971 GO:0006457|GO:0051082
Apr3g1188 415 Pfam DnaJ domain 14 71 IPR001623 -
Apr3g1188 415 Pfam DnaJ central domain 146 212 IPR001305 GO:0031072|GO:0051082
Apr3g1188 415 MobiDBLite consensus disorder prediction 376 415 - -
Apr3g1188 415 Pfam DnaJ C terminal domain 120 341 IPR002939 -
Apr3g1188 415 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 6 415 - -
Apr3g1188 415 CDD DnaJ_zf 146 212 IPR001305 GO:0031072|GO:0051082
Apr3g1188 415 Gene3D - 109 258 - -
Apr3g1188 415 SUPERFAMILY Chaperone J-domain 8 106 IPR036869 -
Apr3g1188 415 Gene3D DnaJ domain 10 108 IPR036869 -
Apr3g1188 415 SUPERFAMILY HSP40/DnaJ peptide-binding domain 263 352 IPR008971 GO:0006457|GO:0051082
Apr3g1188 415 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Apr3g1188 415 ProSiteProfiles Zinc finger CR-type profile. 133 217 IPR001305 GO:0031072|GO:0051082
Apr3g1188 415 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Apr3g1188 415 CDD DnaJ_C 117 344 - -
Apr3g1188 415 MobiDBLite consensus disorder prediction 376 396 - -
Apr3g1188 415 PRINTS DnaJ domain signature 15 33 IPR001623 -
Apr3g1188 415 PRINTS DnaJ domain signature 46 66 IPR001623 -
Apr3g1188 415 PRINTS DnaJ domain signature 66 85 IPR001623 -
Apr3g1188 415 Coils Coil 380 402 - -
Apr3g1188 415 Gene3D - 260 342 - -
Apr3g1188 415 SMART dnaj_3 12 66 IPR001623 -
Apr3g1188 415 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 6 415 IPR044713 GO:0006457|GO:0030544
Apr3g1188 415 Hamap Chaperone protein DnaJ [dnaJ]. 10 367 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1188 Apr-Chr3 26379277 26381744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1188 14 73 C2H2 Transcription Factor Family AT1G74250 44.928 5.93e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1188 K09503 - gmx:100808604 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1188 3 26379277 26381744 Apr3g1188 3 26379277 26381744 ECH
Apr2g2050 2 25815191 25820848 Apr3g1188 3 26379277 26381744 ECH
Apr2g2050 2 25815191 25820848 Apr3g1188 3 26379277 26381744 PCT