Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1185 ATGTCAATGGACTTGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTAAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCCAATTTGCTATCAGTTAACATGGGAGCGTCACTTCCAACATTTCCTCCTCAAGATCCCCAGTCACAGAAACAGCACCTGAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGATCATCTTCAAAATGTAACAAAATAGCACCATTTGAGGCAGTAGAGCATGAACAACCTAGGATTCCTCCCATTCGTCCTACAGAGAAGAGACATCGCGTTCCTTCTGCTTATAACCGGTTCATTAAAGAGGAAATTCAAAGGATTAAGGCTAGTAATCCCGATATCAGCCACAGGGAGGCTTTCAGCTCCGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGATTAAAGCTGGATGGCAACAAACAAGCAAAGTTGGACCAGGGTGAAGGAACTGAAAAGTCTAAGGGATTCTACTGA 549 0.4463 MSMDLMATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLPTFPPQDPQSQKQHLSFEEPSSKELGSSSKCNKIAPFEAVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKLDGNKQAKLDQGEGTEKSKGFY* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1185 182 Pfam YABBY protein 7 159 IPR006780 GO:0007275
Apr3g1185 182 Gene3D High mobility group box domain 97 156 IPR036910 -
Apr3g1185 182 SUPERFAMILY HMG-box 104 152 IPR036910 -
Apr3g1185 182 MobiDBLite consensus disorder prediction 163 182 - -
Apr3g1185 182 PANTHER PROTEIN YABBY 6-RELATED 1 182 IPR006780 GO:0007275
Apr3g1185 182 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 182 - -
Apr3g1185 182 MobiDBLite consensus disorder prediction 57 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1185 Apr-Chr3 26350309 26358384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1185 1 182 C2C2-YABBY Transcription Factor Family AT1G08465 64.706 2.43e-81 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Apr3g1185 YABBY 9.3e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1185 K25796 - gmx:100500091 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2046 2 25776317 25785130 Apr3g1185 3 26350309 26358384 PCT