Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1183 ATGAGTGATATAAGGAAGTGGTTCATGAAATCACATGACAAAGGCAACAATGCCAGTGACTCCAAATCTTCCAATCAGTCCAAACTTTCTTCGGATAAACCTCAGACGGAGAAAACCGTTCCTGGAGTTCAAGAAAGTTCAGGGAGGAGGATAACTAGCAAATATTTTAATACAAATAAGCAAAAGCCAAAAGATGATAAAGAAACAAAGGAGCTCCCCGCTAAAAGAAAGAATATGAAGGACAACGAGGGTACAACAGAGCCCCTTATTTCAAAGAAAACTCATGATGCTGATGAAGATGATGGAGATGACTCTGTCTTGCCCACCAATAAAAAGAAGTTAGCTGATGTCACACCAACGAAAAAATTGAAGAGTGGATCAGGTAGGGGGATTCCCCGGAAATCTGCAGATTTGGAAGAAAGTGATGAGGATAATGACAAAGATGCTGTGTCTGCTGTTAAATCTGGTGGAAGGGGTCGAGGTGGAAGAGGAGCATCAGCTCAATCAACTGGTGGAAGAGGTAGAGGGGGTGGCAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGCGCTCCTGACTGCTTAAGTGGCTTGACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAAAGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTACCTGTTGTGTGATGAAGATATTGGGGGACGTAAGTCTGCAAAAGCCAAAGAGATAGGAACTTCCTTTCTCACAGAGGATGGGTTATTTGATATGATTCGTGCATCAAAATCTGCAAAAGCTCCTTCACAAGACAAGAAACCTGTGAATAAGGCTGTTGCATTAGCATCCCAGTCAAAAGTTTCTCCAAAATCAGAAGCTAAGGTCCCTCTATCTTCAAACTCGCCTGCTAAACAAGCCAAGCCAAAGACTGCAAATGCTATTCAGTCTTCTGTGATGTGGACAGAGAAGCATCGACCTACTAATCCGAAGGATATCATAGGGAATCAGTCACTTGTTTCACAGCTTCGTAATTGGTTGAAAACTTGGCATGAGCAATTTTTGGACAGTGGTAACAAAAAACAGGGAAAAAAGCCAAATGACTCTGGTTCCAAAAAAGCTGTCTTGTTAAGTGGAACTCCTGGTATAGGAAAAACAACTTCAGCTAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGCGAAAGGTGTTGGTGGGAGCAATGCTAATTCTATCAAGGAACTTGTAACCAATGAGGCCATTGGTGCTAATATGGATCGGTCAAAGCATTCCAAATCTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGTATTTGCAATGACCGTTACAGCCAAAAATTGAAAAGTCTTGTGAACTACTGCTTACTTCTAAGTTTTCGGAAGCCTACAAAGCAACAGATGGCAAAGAAGTTGATGGATGTTGCAAAGACTGAAGGGCTTCAAGTTAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTTAATGGAGATATGCGCATGGCTCTAAACCAGTTACACTATATGAGCCTCTCCATGTCAGTTATCGCCTATGATGATATTAGGCAGCGTTTTCTTACCAATGCGAAAGATGAAGACGTTTCACCATTCACTGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGACGAGAGGATAAATCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTATTATCCAGGAAAATTATATTAATTATAAACCAAGCTTGGCTGGTAAGGATGACGGTGGTATAAAACGCATGAACCTTATTGCCCGTGCCGCTGAGTCTATTGCTGATGGGGATATAGTGAACGTACAGATTCGCAGATATCGACAGTGGCAACTCTCTCAAACTAGTTCTGTTGCTTCATGTATAATTCCTGCTTCATTGTTGCATGGGCAGAGAGAAACACTTGAACAGGGAGAACGAAACTTTAACAGATTTGGTGGGTGGCTAGGGAAGAACTCAACAATGGGCAAAAACAAGAGGCTTTTGGACGATCTGCATGTTCACATTCTTGCTTCTCGTGAATCTAGTTCAGGAAGGGATACCATTCGCCTGGAATACCTTACTCTTCTTCTGAAACAATTGATAGAACCACTGCGAGTCTTGCCAAAGGCTGAAGCTGTTCAGAAAGTTGTGGACTTCATGAATACATACTCTATCAATCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGTCATCCTAATCCACTAGATGGCATACAACCTGCGATTAAGTCTGCCTTGACAAAAGCATACAAAGAGCAAAGCAAATCTGGGAAAGTTCGAGCTGCAGATCTAGTCACTCTTCCTGGAGTAAAGAAGGTCCCTAAGAAGCGGATTGCAGCTATTCTTGAACCAGCTGAAGGAGTGGAACAAGGTGAAGGCGAGGCCTTGTACGAGAGTGAAGAAGAAAACACCTCTGATACAGAAGAGTTGGACACCACCACTGGCGAGAAGCTGCAGTCAGAACTTCAAAGTTTGAATTCAAAGGCCATGCAAGTACAGTTGGAATTGAAGGGAACGGGAAATTCAAGTTCCAAGAAGACATCCGGTGGTAGAGGTAAAGGTGCTTCTGCATCTGGGCAGAAGGCTACTCAAACTTCAAAGGCTACTTCTAAAAGAAAAAGGTGA 2859 0.4236 MSDIRKWFMKSHDKGNNASDSKSSNQSKLSSDKPQTEKTVPGVQESSGRRITSKYFNTNKQKPKDDKETKELPAKRKNMKDNEGTTEPLISKKTHDADEDDGDDSVLPTNKKKLADVTPTKKLKSGSGRGIPRKSADLEESDEDNDKDAVSAVKSGGRGRGGRGASAQSTGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLSGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSAKAKEIGTSFLTEDGLFDMIRASKSAKAPSQDKKPVNKAVALASQSKVSPKSEAKVPLSSNSPAKQAKPKTANAIQSSVMWTEKHRPTNPKDIIGNQSLVSQLRNWLKTWHEQFLDSGNKKQGKKPNDSGSKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIAKGVGGSNANSIKELVTNEAIGANMDRSKHSKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKKLMDVAKTEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMSVIAYDDIRQRFLTNAKDEDVSPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLIIQENYINYKPSLAGKDDGGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVASCIIPASLLHGQRETLEQGERNFNRFGGWLGKNSTMGKNKRLLDDLHVHILASRESSSGRDTIRLEYLTLLLKQLIEPLRVLPKAEAVQKVVDFMNTYSINQEDFDTIVELSKFKGHPNPLDGIQPAIKSALTKAYKEQSKSGKVRAADLVTLPGVKKVPKKRIAAILEPAEGVEQGEGEALYESEEENTSDTEELDTTTGEKLQSELQSLNSKAMQVQLELKGTGNSSSKKTSGGRGKGASASGQKATQTSKATSKRKR* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1183 952 PANTHER REPLICATION FACTOR C SUBUNIT 1 10 924 - -
Apr3g1183 952 MobiDBLite consensus disorder prediction 376 398 - -
Apr3g1183 952 ProSiteProfiles BRCT domain profile. 202 283 IPR001357 -
Apr3g1183 952 MobiDBLite consensus disorder prediction 911 944 - -
Apr3g1183 952 PIRSF RFC1 1 927 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Apr3g1183 952 MobiDBLite consensus disorder prediction 284 333 - -
Apr3g1183 952 Pfam BRCA1 C Terminus (BRCT) domain 204 279 IPR001357 -
Apr3g1183 952 MobiDBLite consensus disorder prediction 18 58 - -
Apr3g1183 952 Pfam Replication factor RFC1 C terminal domain 667 829 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Apr3g1183 952 CDD HLD_clamp_RFC 527 585 - -
Apr3g1183 952 MobiDBLite consensus disorder prediction 911 952 - -
Apr3g1183 952 Gene3D - 338 526 IPR027417 -
Apr3g1183 952 MobiDBLite consensus disorder prediction 867 896 - -
Apr3g1183 952 MobiDBLite consensus disorder prediction 186 201 - -
Apr3g1183 952 Gene3D BRCT domain 179 281 IPR036420 -
Apr3g1183 952 Gene3D - 527 597 - -
Apr3g1183 952 MobiDBLite consensus disorder prediction 1 17 - -
Apr3g1183 952 SUPERFAMILY post-AAA+ oligomerization domain-like 598 743 IPR008921 GO:0003677|GO:0006260
Apr3g1183 952 Coils Coil 893 913 - -
Apr3g1183 952 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 10 924 - -
Apr3g1183 952 SMART BRCT_7 204 282 IPR001357 -
Apr3g1183 952 Gene3D - 599 709 - -
Apr3g1183 952 MobiDBLite consensus disorder prediction 1 208 - -
Apr3g1183 952 MobiDBLite consensus disorder prediction 59 119 - -
Apr3g1183 952 MobiDBLite consensus disorder prediction 871 887 - -
Apr3g1183 952 SMART AAA_5 390 528 IPR003593 -
Apr3g1183 952 CDD AAA 379 490 - -
Apr3g1183 952 MobiDBLite consensus disorder prediction 301 333 - -
Apr3g1183 952 Pfam ATPase family associated with various cellular activities (AAA) 394 493 IPR003959 GO:0005524|GO:0016887
Apr3g1183 952 CDD BRCT_RFC1 202 280 - -
Apr3g1183 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 586 IPR027417 -
Apr3g1183 952 SUPERFAMILY BRCT domain 202 283 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1183 1 906 Core DNA Replication Machinery Family AT5G22010 67.429 0.0 1118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1183 K10754 - gmx:100790070 1510.35