Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1179 ATGTTTAACGGTATGATGGATCCCGAGTTGATCAGGATCGCTCAGGAACAGATGAGTCGCATGTCACCCGCCGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCGGAGCTGATGAGGATGGCCTCGGAGAGCATGAATAACATGAGTGCTGAAGACTTTAAACATGCTGCTGAACAGTTAAAGCATACACGTCCCGAAGAAATGGCGGATATTGGTGAGAAGATGGCCAATGCAACACCTGATGAAGTAGCAGCAATGCGTGCCCGTGTTGATACCCAGATCAAATATCAATTAAGTGCGGCTGAGACGTTGAAGAAGCAGGGAAATGAATTTCATAATCAAGGAAAATTCAGTGATGCTCTGAAGAAGTACATGCTTGCTAAGGAAAACATTAAAGACATTCCATCTTTCCAAAGTAGAAAGCTTCTCTTGGCATGCTCTCTCAACTTGATGTCCTGTTACTTGAAGACAAGGCAGTTTGATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGATGCAAAGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCATATAAGGAACTAGGTCTACTAAGAGATGCTGTTACTGATTTAAGTAAGGCACTTGAAGTGTCCCCTGATGATGATACAATTGCAGAGCTTTTAAGGGACACCAAGGAACAGTTGGCAAAGGAAGGTGGTGACTGTGCACCTGGAAGGCTGGTAATTGAAGAAATAACTGATGAAGTTGAGGCTGTACCTTCTGGAAACAACAGAAGCCCTTTGGAACAATCAGTGGTTCAACCAAAAAAATATGGTGACTCCTCTGAGAGTAGCAGTACTACTAACAATGGAAATAAAAAAACAAATGCAGACAGTTTAGATTCATTGAAAAAAGATCCAGAAGCTGTCAGATCATTCCAAAACTTCATGTCAAATGCTGATCCTGCCACACTGGCTTCTTTGAACACTGGACAATTCAAAGATATATCTCCAGATATGATTAGAACAACCTCAGACATGATTGGTAAGATGTCACCTGAGGAACTTCAAAAAGTGCTTGACATGGCTTCTTCATTTCAAGGGGACAATCCATTATTTAGAGGAGGTTCCCCTGCTTCTCCTTTGAACGCTGGATCAATTCCTCCCAATGTGACACCTGACATGTTTAAAGCTGCGAGTGATATGATAAGTAAAATGCCTTCAGATGACCTAAAGAAGATGTTTGAAATGGCATCCTCACTGAGAGGGAAAGAATCTATGCCATTGTCTGTAGACGAGATTGAAAGAAATGTTTCCCATTCAAACTTCCCATCATCAAGTACTAATGCTTTTGGGGAATCAAGTGCTCCACGTAATGCATTTTCAAATATGAGAAATTCTTCTCAATCAAACTTCCCTTCCTCAAGTACTGATCTACAAGAACAGATGAGAAACCAGATGAAAGATCCGGCTATGCGACAGATGTTCACGTCAATGATTAAAAATATGAGCCCAGAGATGATGGCAAACATGGGTGAGCAATTTGGTGTCAAGCTTTCGCCAGAAGACGCAGCAAAAGCTCACAAAGCCATGTCATCCTTATCACCAGAGAGCTTGGATAAAATGATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCACGAAAGACGAAGAACTGGCTGCTAGGGAAACCGGGCATGATCTTTGCGATATGCATGCTCATTTTGGCTGTCATTCTCCACCGGTTGGGCTTCATTGGTGGCTAG 1749 0.4237 MFNGMMDPELIRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMNNMSAEDFKHAAEQLKHTRPEEMADIGEKMANATPDEVAAMRARVDTQIKYQLSAAETLKKQGNEFHNQGKFSDALKKYMLAKENIKDIPSFQSRKLLLACSLNLMSCYLKTRQFDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLRDAVTDLSKALEVSPDDDTIAELLRDTKEQLAKEGGDCAPGRLVIEEITDEVEAVPSGNNRSPLEQSVVQPKKYGDSSESSSTTNNGNKKTNADSLDSLKKDPEAVRSFQNFMSNADPATLASLNTGQFKDISPDMIRTTSDMIGKMSPEELQKVLDMASSFQGDNPLFRGGSPASPLNAGSIPPNVTPDMFKAASDMISKMPSDDLKKMFEMASSLRGKESMPLSVDEIERNVSHSNFPSSSTNAFGESSAPRNAFSNMRNSSQSNFPSSSTDLQEQMRNQMKDPAMRQMFTSMIKNMSPEMMANMGEQFGVKLSPEDAAKAHKAMSSLSPESLDKMMLWADRIQRGVESARKTKNWLLGKPGMIFAICMLILAVILHRLGFIGG* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1179 582 MobiDBLite consensus disorder prediction 250 295 - -
Apr3g1179 582 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 59 581 - -
Apr3g1179 582 MobiDBLite consensus disorder prediction 432 474 - -
Apr3g1179 582 SUPERFAMILY TPR-like 96 227 IPR011990 GO:0005515
Apr3g1179 582 MobiDBLite consensus disorder prediction 251 289 - -
Apr3g1179 582 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Apr3g1179 582 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Apr3g1179 582 PANTHER OUTER ENVELOPE PROTEIN 61 59 581 - -
Apr3g1179 582 Gene3D Tetratricopeptide repeat domain 90 232 IPR011990 GO:0005515
Apr3g1179 582 SMART tpr_5 103 136 IPR019734 GO:0005515
Apr3g1179 582 SMART tpr_5 146 179 IPR019734 GO:0005515
Apr3g1179 582 SMART tpr_5 180 213 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1179 Apr-Chr3 26304833 26309893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1179 93 227 Calmodulin-binding Proteins AT5G48570 33.333 1.68e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1179 - - gmx:100800315 951.429