Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1174 ATGGTTAGAGGTGGTGGACTCTCCATGGATTCAGATCCAATTGGGAGCTTCTTCCTCCACAAACCAATTGTTCTGAACTCTTTCCCTGAAGACATAAATCATGCTAAGTGGAAACTTAGTCCCAACAACAACATGGAAGCCACAATTAGCACCAAAGGGTCTTCTTCTTCACCACCTTCCATCCCCTTCCAAGTCAACCTTAGCTCTTCTTCAAACAACCATGTCTCTTCTCCATCAGAGATGGACTTCTTCTCCGACAAGAACAACAACAAAGATGACAAGGTTGCCGCCTCTACCTCTGCCTCTGTCCCCGACACTGATCACCAAACACATGATCGTTCCTCCACTCCTCCTATGTTGGAATGCAAAGTAAACACTGGTTTGAATCTTCTTACTACCAATACTACTAGTGATCAATCCATGGTGGAAGATGACATGTCAGGTTATTCAGAAGATAAAAGAACTAAAAATGAGCTGGCTGTTCTTCAAGCTGAGATTGAGAGAACAAAGGGAGAGAATCACAGGTTAAGGGAGATGCTTGATCAGGTTAATACCAATTACAAAGCTCTGCACATGCATTTGGTGAATTTGATGCAGGAGCAGAAGGGTGTGGAAGCTGAAGAACAAGAAGAGTTTGATGGAAAATTAGAAGAAAAGAAACAAAATGAGAATGGTGGGGTATTGGTGCCAAGGCAATTCATGGATCTTGGTTTGGCTACTAACGCTGACACCGATGAACCCTCTTCTTCATCAGCGGGAAGAAGTCAAGATCCATCAGGATCACCAGTTAATAATAATAATAACAACGTAGAAGTGGCTTCCAAGGAATTGGGGACCAGTAAGAATGTGAATGTTAGTGATGAAGGAGTTGCATATGATCAACGAGAGAAGAAGGAATATGGTAGGGAGAATGAAAGGGAGGATAGTCCTTCAGGTCATGCTTTTGCCGGTGATAAAATTCCAAGATTCAGTCCTCCAAAGAATGTTGATCAGGCTGAGTCAACCATGAGAAAGGCAAGAGTTTCAGTTAGAGCCCGATCAGAAGCACCCATGATCACTGATGGTTGTCAATGGCGAAAGTATGGACAAAAGATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTACAGGTGCACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTACAAAGGTGTGCTGAAGACCGAACAGTACTTATCACAACATATGAAGGAAATCACAACCACCCTTTGCCTCCAGCAGCTATGGCAATGGCACAAACCACTTCCTCAGCTGCAAGAATGCTGCTTTCAGGATCAATGTCAAGTGCTGACAGCCTAATGAATCCAAACTTCTTCACAAGGACACTCCTTCCATGCTCTTCAAGCATGGCAACTATCTCAGCATCTGCTCCATTCCCAACTGTTACATTGGACCTAACTCAATCTCCAAATCCAAATTCTCTGCAGCTCCCAAGGCCTTCAAGCCAGTTACAAATTCCCTTCCCAGGGGTTCCTCAGAATTTTGCAAACTCTCCAGCGTCATTAATGCCTCAGATATTTGGTCAGGCACTTTACAACCAATCAAAATTTTCTGGTCTACAAATGTCACATGATGCAGACCCTTCTTCACAATTGGTTAATCGCACTCCACAGGTACCACCACGGATTACTGACACAGTTAGTGCTGCCATTGCTGCTGATCCAAACTTCACTGCAGTTTTGGCAGCAGCCATCACTTCCATAATTGGTGGTGCTCAGCAACACAACAACAACAACAACAACAGTAGTAATAATAATAATACCAATGACAACATGACAACCAGCAACAACAATGGCAACATCACAAGTAGCAATGGAAAGCAATAA 1851 0.436 MVRGGGLSMDSDPIGSFFLHKPIVLNSFPEDINHAKWKLSPNNNMEATISTKGSSSSPPSIPFQVNLSSSSNNHVSSPSEMDFFSDKNNNKDDKVAASTSASVPDTDHQTHDRSSTPPMLECKVNTGLNLLTTNTTSDQSMVEDDMSGYSEDKRTKNELAVLQAEIERTKGENHRLREMLDQVNTNYKALHMHLVNLMQEQKGVEAEEQEEFDGKLEEKKQNENGGVLVPRQFMDLGLATNADTDEPSSSSAGRSQDPSGSPVNNNNNNVEVASKELGTSKNVNVSDEGVAYDQREKKEYGRENEREDSPSGHAFAGDKIPRFSPPKNVDQAESTMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADSLMNPNFFTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPNSLQLPRPSSQLQIPFPGVPQNFANSPASLMPQIFGQALYNQSKFSGLQMSHDADPSSQLVNRTPQVPPRITDTVSAAIAADPNFTAVLAAAITSIIGGAQQHNNNNNNSSNNNNTNDNMTTSNNNGNITSSNGKQ* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1174 616 Coils Coil 152 186 - -
Apr3g1174 616 ProSiteProfiles WRKY domain profile. 347 413 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr3g1174 616 MobiDBLite consensus disorder prediction 240 334 - -
Apr3g1174 616 MobiDBLite consensus disorder prediction 583 616 - -
Apr3g1174 616 MobiDBLite consensus disorder prediction 205 228 - -
Apr3g1174 616 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 57 603 IPR044810 GO:0003700
Apr3g1174 616 MobiDBLite consensus disorder prediction 48 121 - -
Apr3g1174 616 SUPERFAMILY WRKY DNA-binding domain 345 413 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr3g1174 616 MobiDBLite consensus disorder prediction 48 84 - -
Apr3g1174 616 MobiDBLite consensus disorder prediction 242 287 - -
Apr3g1174 616 Gene3D WRKY domain 337 414 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr3g1174 616 MobiDBLite consensus disorder prediction 290 313 - -
Apr3g1174 616 Pfam WRKY DNA -binding domain 354 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr3g1174 616 PANTHER OS05G0567200 PROTEIN 57 603 - -
Apr3g1174 616 SMART WRKY_cls 352 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr3g1174 616 MobiDBLite consensus disorder prediction 205 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1174 Apr-Chr3 26270322 26273053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1174 1 589 WRKY Transcription Factor Family AT1G62300 44.497 2.34e-136 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr3g1174 WRKY 4.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1174 - - gmx:100127384 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1174 3 26270322 26273053 Apr3g1174 3 26270322 26273053 ECH
Apr3g1174 3 26270322 26273053 Apr1g1790 1 27635834 27638809 ECH
Apr2g2029 2 25631244 25634077 Apr3g1174 3 26270322 26273053 PCT