Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1173 ATGGTGTGGAACAGAGGCCACACCATAGGCCACGGATCAACTGCCACCGTCTCCATCGCCACGTGCTGCGGCGGCGTCTTCGCCGTCAAGTCATCGGAGCTATCTCAATCAGAGCCTTTAAAGAAAGAGCAAACAATTCTATCTTCTCTAAGTAGTCCTTATGTGGTTACATACAAAGGGTGTGACATTACCATGGAGAACAACAAGCTTATGTTCAATTTCTTCATGGAGTACATGCCCTTTGGCACCCTTCTTCAGGCGACTCGCCGGCACGGTGGGCGGATAAAGGAACCGGTGATCAAATGCTACACAAGGCAAATTATGCAAGGGCTAGAGTACTTGCATTCAAAAGGGTTGGTGCATTGTGACATCAAGGGTGCCAACATCTTAATTGGTGAAGATGGGGCTAAAATTGGAGATTTTGGGTATGCCAAGGGTGCTGCCGATGCAGCTGCGCCGATCTGTGGCACGCCTATGTTTATGGCGCCGGAGGTGGCGCGTGGGGAGGAACAAGGGTGTCCTAGTGATGTTTGGTCACTTGGATGCACTGTGATTGAAATGGCCACTGGTAGTGCACCATGGCCTAATGTGGCAGACCCTTTTTCAGTGCTTTATCACATTGCATATTCTGGTGAGGTTCCTGAGATTCCTTGTTTTCTATCTGAGGAAGCTAAGGATTTCTTGGGGAAGTGTTTGAGGAGGAATCCTCAAGAGAGATGGACAGCCAGTGAACTTTTGAAGCATCCATTTCTTGGGGAATTTTGTTCCAATAGCAATAAGCAAGTTCTGGAGTCTAATTCAAGTTCCCCAAAAAGTGTTCTTGAACAAGGCTTTTGGAGTTGTGTGGAAGAATCAGAAAACTTTGGAAATTTCGTTCACACAAAAAGTTTTGAAATTTCAGCTATTGGAAGGGTGAGAAGTTTAGCTTTGTGTTCAGGGGTGCCATGTTGGGCACGGCATCATGATGATGGTGATGATGATGATTGGATCACAACCAGAAGGAATGAGGGAGGGGTTGAAGTTGAAGGTTTTGACAATTGTGGGTCAGAGACAGCTTCTACTACTAGTGATGGGTTGGCCCCGAAGAGGTTGGTAAAAAGCAATGTCAGTGGTAGAATTAGTGGACATGTTCGTCAGGATCACATATGTATGAGTGCTAGTGTTGTAGTTAGTGATCTCAATTTTGACAGAGGCATTGCTAAGATGCCATTCCCTTCAATAATAGATTCTTTATAA 1236 0.4571 MVWNRGHTIGHGSTATVSIATCCGGVFAVKSSELSQSEPLKKEQTILSSLSSPYVVTYKGCDITMENNKLMFNFFMEYMPFGTLLQATRRHGGRIKEPVIKCYTRQIMQGLEYLHSKGLVHCDIKGANILIGEDGAKIGDFGYAKGAADAAAPICGTPMFMAPEVARGEEQGCPSDVWSLGCTVIEMATGSAPWPNVADPFSVLYHIAYSGEVPEIPCFLSEEAKDFLGKCLRRNPQERWTASELLKHPFLGEFCSNSNKQVLESNSSSPKSVLEQGFWSCVEESENFGNFVHTKSFEISAIGRVRSLALCSGVPCWARHHDDGDDDDWITTRRNEGGVEVEGFDNCGSETASTTSDGLAPKRLVKSNVSGRISGHVRQDHICMSASVVVSDLNFDRGIAKMPFPSIIDSL* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1173 411 Pfam Protein kinase domain 5 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1173 411 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 351 - -
Apr3g1173 411 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Apr3g1173 411 CDD STKc_MAPKKK 3 251 - -
Apr3g1173 411 PANTHER MAP KINASE KINASE KINASE 1 351 - -
Apr3g1173 411 SUPERFAMILY Protein kinase-like (PK-like) 5 273 IPR011009 -
Apr3g1173 411 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1173 411 ProSiteProfiles Protein kinase domain profile. 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1173 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Apr3g1173 411 Gene3D Transferase(Phosphotransferase) domain 1 3 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1173 Apr-Chr3 26259266 26260546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1173 1 335 MAP Kinase Kinase Kinase AT1G05100 50.720 3.45e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Apr3g1173 Pkinase 2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1173 K20716 - gmx:100819665 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1173 3 26259266 26260546 Apr3g1173 3 26259266 26260546 ECH
Apr3g1173 3 26259266 26260546 Apr1g1788 1 27620332 27621790 ECH
Apr2g2028 2 25618909 25620081 Apr3g1173 3 26259266 26260546 PCT