Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1168 ATGGAGCTTCGTTCTCGTCGACGCCTTTCCAATTCCATGTCATCCGCAGAAGGGAAGGAGATGCAGCGGAGGGATGCTTTTGGGGAAGTTGAATTTAATGCTCAGTGCAGCTTTAATACCAATGAAGACGTTTATGGTACATTTTCAAGATCGGATTCTAATTATGAAGATGAAGACTTTGGTGGGCACTTGCTGTTTGACTTGAATCAGGAACCAACTTCAAGCGTTAGTGTTTCTGATGGAGAAGATAATGTTTCTGATTCATCTGATGGTAGCAACCCTTTATCTAAAAGGGGAAAGGTGCAATCCAGAAAGAAAAGAAAAAAAATGAAGTTGAAAAATGGAGTAAACAGTGATGTAGAGAAAATGATGGAGCAGGGGGATAATGAGGAATACTCAATAGCTTTCCGTCAATCGGTTCTCATCAATTTGACTAACGTGAAAAAGAAGAAAAAGGTGAAAAAAACAAAGGAAGATTCTAAGACAGTGTTATTGTGGAATGTTTGGGAAGAGGAGCAAGAGAGATGGATTGATGAGAATATGTTTATAGATATTAACTTAGATAATGAGAGTGAAACAATGAATGAAACTGCTGATGCATCCTCAGATCTGACTATGCCTTTGCTAAGGTATCAAAGGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAGGTCTGCAACTAGAGGAGGAATCCTTGCTGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCCCTTGTCCTTGCCACGCGTGAATTCCATCAGATGAGTTGTGAACCAGATAAACCGCTGCCTTCACCAGGGTCATCAAAAACATTACCTACAGTCAAAGGAACACTTGTCGTATGTCCTGTGGTTGCTGTCACTCAGTGGGTTGGTGAAATTGATCGGTTTACATTGAAAGGAAGCACCAAGGTGCTGGTTTATCATGGGGCAAGGAGAGGGAAGAGTTGTGAACAGTTTTCTGAGTATGATTTTGTAATAACCACATACTCTATTGTTGAGTCTGAGTACAGAAAGTATATGATGCCTCCTAAGGAGAAGTGTCCGTACTGTGGAAAATTATTTTACCAGAATAAGTTATCTTATCACCAGATGTATTTTTGTGGACCTTATGCAGTTAGAACAGAAAAACAATCAAAGCAAAATAAGAAAAAGAAAGGGGATGTTACTGAACAGAAGATCAAAGAATCAAAGTGCCAGAATGGAGAATTGGAACAGGGTTTTGTCAAGAAAAAAGGAGAGGAATTGCTCGTCAGAATGGAAGACTCAGATGTGGTAAGCAAGGAGAAGTCATTTTTACATGCTGTAAAGTGGCAGAGGATCATACTGGATGAGGCACATTATATAAAATCTAGACATTGCAACACTGCAAAAGCAGTTCTTGCTTTAGAGTCTTCCTACAGATGGGCATTAAGTGGTACACCCCTTCAGAACCGTGTTGGAGAGCTATATTCTCTGGTTCGATTTCTTCAAATAGTTCCTTATTCCTACTACTTGTGCAAGGATTGTGATTGCATGACACTTGATCATAGCTCCTCTAAACAATGTTCAAACTGCAGCCACAGTTCTGTTAGACATTTCTGTTGGTGGAACAAATATATTGCCACACCAATTCAATCATATGGATATGGTGATTATGGGAGAAGAGCAATGATATTGCTTAAACACAAAATTTTAAAGAACATAGTTCTAAGGCGCACTAAAGTAGGCAGGGCTGCTGATCTTGCACTTCCTCCAAGAATTGTTTCATTGAGGAGGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAGTCGTTATACAATGAAAGTCAGGCACAGTTTAATACATATGTTGAAGCGAATACTTTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGGCTACGGCAGGCTGTTGATCATCCGTATCTTGTGGTATATTCTCCAACTGCAGCATTAAGAGGTGGGAACTTGGCTAGTAATGGTGACGTTGAACAAGCATGTGATCTTTGTCATGATGCAGTAGAAGATCCTGTGGTAACCTCTTGTGAGCATATTTTTTGCAAGGCATGCTTGATAGACTTCTCTGCTTCCTTGGGACGACTATCATGCCCCTCATGCTCTAAATTACTTACAGTTGATTTAGCTTCCAACAAGGATATTGGGGTTCAGGCTATTAATAAAACAACAATTAAGGGTTTCAGGTCCTCTAGCATTTTAAACAGAATTCAGCTGGAGAACTTTCAGACAAGCACTAAAATAGAGGCATTGAGAGAAGAAATTAGATTTATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATAAACTACTCCCTGCACAAGTCAGGGGTATCTTGCGTTCAGTTGAATGGAAGCATGACATTGGCTGCTAGGGATACTGCCATTAAAAGATTTACTGATGATCCAGACTGCAAAATTTTCCTCATGAGCTTGAAAGCTGGAGGTGTTGCTCTCAATCTGACAGTAGCATCACATGTTTTCCTTATGGACCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAAGACAGAATTCACCGGATAGGTCAATACAAACCAATCAGAATTGTGAGATTTGTCATTGAAAACACAATCGAGGAAAGGATTTTGAAGCTCCAAGAAAAGAAGGAGCTAGTGTTTGAAGGGACTATCGGTGGCTCTTCTGAAGCTCTGGGGAAATTGACAGAGGCTGATCTGAAATTTCTCTTTGTCACTTAA 2766 0.4031 MELRSRRRLSNSMSSAEGKEMQRRDAFGEVEFNAQCSFNTNEDVYGTFSRSDSNYEDEDFGGHLLFDLNQEPTSSVSVSDGEDNVSDSSDGSNPLSKRGKVQSRKKRKKMKLKNGVNSDVEKMMEQGDNEEYSIAFRQSVLINLTNVKKKKKVKKTKEDSKTVLLWNVWEEEQERWIDENMFIDINLDNESETMNETADASSDLTMPLLRYQREWLAWALKQERSATRGGILADEMGMGKTIQAIALVLATREFHQMSCEPDKPLPSPGSSKTLPTVKGTLVVCPVVAVTQWVGEIDRFTLKGSTKVLVYHGARRGKSCEQFSEYDFVITTYSIVESEYRKYMMPPKEKCPYCGKLFYQNKLSYHQMYFCGPYAVRTEKQSKQNKKKKGDVTEQKIKESKCQNGELEQGFVKKKGEELLVRMEDSDVVSKEKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCMTLDHSSSKQCSNCSHSSVRHFCWWNKYIATPIQSYGYGDYGRRAMILLKHKILKNIVLRRTKVGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSPTAALRGGNLASNGDVEQACDLCHDAVEDPVVTSCEHIFCKACLIDFSASLGRLSCPSCSKLLTVDLASNKDIGVQAINKTTIKGFRSSSILNRIQLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMTLAARDTAIKRFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSEALGKLTEADLKFLFVT* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1168 921 Pfam Zinc finger, C3HC4 type (RING finger) 666 705 IPR018957 GO:0046872
Apr3g1168 921 Gene3D - 585 919 IPR027417 -
Apr3g1168 921 SUPERFAMILY RING/U-box 663 710 - -
Apr3g1168 921 PANTHER - 146 396 - -
Apr3g1168 921 PANTHER - 758 918 - -
Apr3g1168 921 PANTHER - 429 756 - -
Apr3g1168 921 MobiDBLite consensus disorder prediction 1 23 - -
Apr3g1168 921 ProSiteProfiles Zinc finger RING-type profile. 666 706 IPR001841 -
Apr3g1168 921 Pfam SNF2-related domain 222 643 IPR000330 GO:0005524|GO:0140658
Apr3g1168 921 SMART ultradead3 204 500 IPR014001 -
Apr3g1168 921 CDD DEXDc_SHPRH-like 208 568 - -
Apr3g1168 921 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 221 495 IPR014001 -
Apr3g1168 921 Coils Coil 738 758 - -
Apr3g1168 921 Gene3D - 210 350 IPR038718 -
Apr3g1168 921 SMART ring_2 666 705 IPR001841 -
Apr3g1168 921 MobiDBLite consensus disorder prediction 72 98 - -
Apr3g1168 921 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 747 911 IPR001650 -
Apr3g1168 921 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 731 IPR013083 -
Apr3g1168 921 Gene3D - 375 584 IPR038718 -
Apr3g1168 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 579 919 IPR027417 -
Apr3g1168 921 ProSitePatterns Zinc finger RING-type signature. 681 690 IPR017907 -
Apr3g1168 921 Pfam Helicase conserved C-terminal domain 751 865 IPR001650 -
Apr3g1168 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 568 IPR027417 -
Apr3g1168 921 SMART helicmild6 782 865 IPR001650 -
Apr3g1168 921 CDD SF2_C_SNF 749 876 - -
Apr3g1168 921 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 146 396 - -
Apr3g1168 921 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 429 756 - -
Apr3g1168 921 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 758 918 - -
Apr3g1168 921 MobiDBLite consensus disorder prediction 72 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1168 Apr-Chr3 26215817 26226160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1168 141 921 RAD5 or RAD16-like Gene Family AT1G05120 66.965 0.0 1077
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr3g1168 SNF2_N 2.2e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1168 K15083 - gmx:100786366 1312.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1168 3 26215817 26226160 Apr3g1168 3 26215817 26226160 ECH