LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr3g1164	ATGGGGGTGATAAGGGCTGCTATTGGAGATGCAATTTTGACATCAACATGGGTTTTCATTATCTCAACTTTAAGGATTGTTGTAACTGAGGTAGCTGTTTTCCTTGGTCTTCAACCACTTTCAGTTGCAGGCCTAATGATCACCACCATCTTCAACTCCCTTTATGTCCTCACCATAGGCTTCATTGGAAGAATATTGGGTGGTGCTAGCTTTAACCCTTCGACCACTGTTTCCTTCTACACTGTAGGGCTAAGGCCTGATTCATCTCTTGCATCCATGGCTGTAAGATTTCCTGCTCAAGCTGTTGGTGGGGTTGTTGGTGCCAAGACTCTCCTATTAGTGATGCCAACCCACTACAAGCACATGCTGAAAGGGCCTTTCTTGAAGGTAGACTTGCATACAGGTGCTATAGCTGAGGGTGTTTTAACTTTTACTCATAGCTTGGCTATACTTTTTATCATGCTTAGGGGTCCTAAAAACCCATTTCTTAAGGTGTATTTGCTTTCTGTGGCTACTGTGGCTTTGGTTATTCCGGGTTCTGGGTTCACTGGTCCTTCTATGAACCCAGCTAATGCCTTTGGATGGGCCTATACAAACAACAAGCACAACACTTGGGAGCATTTTTATGTCTATTGGATATGTCCTTTTATAGGGGCTGCTTCAGCTGCTTTGATTTACCGGTTTCTATTTATGTCATCAACCAAGCAAAAGAAAGCTTGA	720	0.4333	MGVIRAAIGDAILTSTWVFIISTLRIVVTEVAVFLGLQPLSVAGLMITTIFNSLYVLTIGFIGRILGGASFNPSTTVSFYTVGLRPDSSLASMAVRFPAQAVGGVVGAKTLLLVMPTHYKHMLKGPFLKVDLHTGAIAEGVLTFTHSLAILFIMLRGPKNPFLKVYLLSVATVALVIPGSGFTGPSMNPANAFGWAYTNNKHNTWEHFYVYWICPFIGAASAALIYRFLFMSSTKQKKA*	240

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr3g1164	239	PRINTS	Major intrinsic protein family signature	52	76	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Apr3g1164	239	PRINTS	Major intrinsic protein family signature	92	111	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Apr3g1164	239	PRINTS	Major intrinsic protein family signature	169	191	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Apr3g1164	239	PRINTS	Major intrinsic protein family signature	209	229	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Apr3g1164	239	SUPERFAMILY	Aquaporin-like	3	233	IPR023271	-
	Apr3g1164	239	Gene3D	Glycerol uptake facilitator protein.	2	239	IPR023271	-
	Apr3g1164	239	PANTHER	AQUAPORIN SIP1-1	1	239	IPR044222	GO:0015250
	Apr3g1164	239	PANTHER	MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER	1	239	-	-
	Apr3g1164	239	Pfam	Major intrinsic protein	4	226	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr3g1164	Apr-Chr3	26196112	26197349	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr3g1164	1	230	Major Intrinsic Protein MIP	AT3G04090	46.522	9.59e-64	197

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr3g1164	K09875		-	gmx:100797126	390.578