Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1152 ATGGGTAGAATATTGTTCCTCTTGGTTTTTGGCCTGTGGATTCCCTTGAAAGTGGTGGGAAGAACAGGACCATCAGCTACCACTATGAATTCTACTGTTTCTTCAAGACCAAAGGTTGTGAAAATTGGAGCCTTGTTTACTTTTGATTCGGTCATTGGGAGATCGGCTAAACCTGCAATTATGGCTGCTGTAAATGAGGTTAATTCGAGCATGAGTATTCTCCCTGGCATTGAACTGCAAGTTATTTTTCATGATTCAAATTGCAGTGGATTTCTTGGAACAATGCAAGCTCTGCAGTTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCCCTGTCATCTGTAATTGCTCATATCATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTATCGTTTGGAGCTACTGATCCCACTCTATCTTCTCTGCAATACCCATTTTTTGTCCGCACTACCCAGAATGACTATTATCAGATGTTTGCAATTGCAGACTTTGTTGATTATTTCAGATGGAGGGAGGTAATTGCCATTTTTGTGGATGATGATAATGGGAGGAATGGAATTTCTGCGTTGGGTGATGCATTGTCAAAGAAACGTGCCAAGATCTCTTACAAGGTTGCTTTCCCTCCTGGTGCCACAGAAAGTGATATCAGTGACTTATTAAATGAAGTAAACTTAATGGAATCAAGGGTCTATATTGTGCATGTTAATCCTGATTCTGGTCTAGCAATTTTTACTATAGCCATGAAGCTAAGAATGATGGGCAATGGTTATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCATTTGAGCAAGCTGACACTGACACGATGGATCTCTTACAAGGAGTTGTGGCATTTTGTCATCACATTCCTGATACTGATCTCAAGAAGAGTTTTCTCTCCAATTTGAACAGCATAAAAGACAAGGAGACTAGAAGCTTCAATTCTTATGCATTTTATGCATATGATTCTGTTTGGTTAGCAGCTCGTGCCCTTGATGCTTTTCTCAATGAAGGTGGAAATATATCATTCTCTAGTGACCCTAGGTTGCATGACATAAATGCAAGCATGTTGCAGTTAGCATCTCTTCATACCTTTGATGGTGGCCAACAGTTTCTCCAGACAATTTTGAGAACAAACTTCACTGGTGTGAGTGGTCAAATTGAGTTTGACATGGACAAGAATTTAGTTCATCCAGCATATGATATTCTAAATGTTGGAGGCAGTGGATCACGTAGAATTGGTTATTGGTCTAATCACTCTGGTCTCTCAGTTATAGCTCCTGAAATTTTGTATGGGAAAAATTCATCTAACACTTCTTCAAAGAGAAATCAACAACTATACAGTGTGATATGGCCTGGAGAGGCTACAACTACACCAAGGGGATGGGTGTTTCCTAACAATGGACGGCCACTTCGGATAGCAGTGCCAAACCGAGTGAGCTACAAGGAGTTTGTTGCCAAAGACAAGAACCCTCCAGGGGCACAAGGCTATTGCATTGATGTCTTTGAAGCAGCCTTAAACTTGTTGCCTTATCCTGTCCCACGAGAATATATATTGTATGGAAATGGTGAAAGGAATCCTAAGTATGATGAGCTTGTGGAAAAGGTTGCACAAAATAACTTTGATGCAGCTGTTGGGGATGTTACAATTGTCACAAATAGGACAAGGATTGTGGATTTTACTCAACCTTTCAGTGAGTCAGGGCTTGTTGTTGTTGTTCCTGTCAAGGAGGTGAAGTCAAGCCCTTGGTCTTTCCTTGAACCATTCACTGCTCAAATGTGGTGTGTCACTGGGGCTTTTTTTCTTTTTGTGGGAACTGTTGTGTGGATTCTTGAGCACAGGCTCAATCATGAGTTTCGTGGTCCACCGAGCAAGCAGCTCATGACAGTGTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTACACTTGGGCGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTAATCATAAATTCAAGCTACACAGCTAGCTTGACATCTATCCTCACTGTGCAGCAATTGTCTTCACAAATTGAAGGAATTGACAGCTTGATCTCAGGTACTCAACCAATTGGAATTCAAGATGGGTCATTTGCAAGGAAGTATCTGATAGACGACCTCAATATAGCTGAATCTAGGATAGTTACATTGAAAAATATGGAGGAATATATTGATGCCCTTCAACGTGGTCCAAATGATGGAGGGGTTGTGGCAGTTGTTGATGAGCTTCCTTATATTGAGGTCTTGATGTCCAGAACTGATTGTAAGTTCAGAACTGTAGGGCGCGAGTTCACTAAGAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACTTGTCAACAGCAATTCTTCAACTTTCTGAAAGTGGGGACTTGCAAAAGATTCATGACAAATGGCTTAATAAAAAGGAGTGTACAACCAGTGATGTTGATTCAAGCAAACTATCTCTTACAAGCTTCTGGGGCCTCTTTCTTGTGTGTGGCATTGCATGTATCCTTGCCTTGATTGTATTCTTTGCCAGAGTGTGCTGTCAATATAACAAATTCAACCCAGAAGCTGAGAAGATTGATGAGGAAATTCAACCAGTGAGGTCTAGACGTTCAAGCAGAACTCCTAGCCTCAAGAACTTGATTGGTTTTGTAGATAAAAAGGAAGCTGAAATCAAAGAAATACTTAGGGAGAACAAAAAAAGGAGAAGAAGTCTAAGTTTGGAAAACCGTTCCAATTCATTACCCACTTAG 2796 0.4106 MGRILFLLVFGLWIPLKVVGRTGPSATTMNSTVSSRPKVVKIGALFTFDSVIGRSAKPAIMAAVNEVNSSMSILPGIELQVIFHDSNCSGFLGTMQALQLMENDVVAVVGPLSSVIAHIISHVVNELHVPLLSFGATDPTLSSLQYPFFVRTTQNDYYQMFAIADFVDYFRWREVIAIFVDDDNGRNGISALGDALSKKRAKISYKVAFPPGATESDISDLLNEVNLMESRVYIVHVNPDSGLAIFTIAMKLRMMGNGYVWIATDWLPSVLDSFEQADTDTMDLLQGVVAFCHHIPDTDLKKSFLSNLNSIKDKETRSFNSYAFYAYDSVWLAARALDAFLNEGGNISFSSDPRLHDINASMLQLASLHTFDGGQQFLQTILRTNFTGVSGQIEFDMDKNLVHPAYDILNVGGSGSRRIGYWSNHSGLSVIAPEILYGKNSSNTSSKRNQQLYSVIWPGEATTTPRGWVFPNNGRPLRIAVPNRVSYKEFVAKDKNPPGAQGYCIDVFEAALNLLPYPVPREYILYGNGERNPKYDELVEKVAQNNFDAAVGDVTIVTNRTRIVDFTQPFSESGLVVVVPVKEVKSSPWSFLEPFTAQMWCVTGAFFLFVGTVVWILEHRLNHEFRGPPSKQLMTVFWFSFSTMFFSHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQDGSFARKYLIDDLNIAESRIVTLKNMEEYIDALQRGPNDGGVVAVVDELPYIEVLMSRTDCKFRTVGREFTKSGWGFAFQRDSPLAVDLSTAILQLSESGDLQKIHDKWLNKKECTTSDVDSSKLSLTSFWGLFLVCGIACILALIVFFARVCCQYNKFNPEAEKIDEEIQPVRSRRSSRTPSLKNLIGFVDKKEAEIKEILRENKKRRRSLSLENRSNSLPT* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1152 931 Pfam Ligand-gated ion channel 820 849 IPR001320 GO:0015276|GO:0016020
Apr3g1152 931 SMART GluR_14 478 820 IPR001320 GO:0015276|GO:0016020
Apr3g1152 931 Gene3D - 155 428 - -
Apr3g1152 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 913 - -
Apr3g1152 931 Pfam Bacterial extracellular solute-binding proteins, family 3 501 819 IPR001638 -
Apr3g1152 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 53 69 - -
Apr3g1152 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 113 141 - -
Apr3g1152 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 244 267 - -
Apr3g1152 931 CDD PBP1_GABAb_receptor_plant 41 430 IPR044440 -
Apr3g1152 931 Coils Coil 899 919 - -
Apr3g1152 931 Pfam Receptor family ligand binding region 57 412 IPR001828 -
Apr3g1152 931 PANTHER GLUTAMATE RECEPTOR 3.4 29 913 - -
Apr3g1152 931 SUPERFAMILY Periplasmic binding protein-like II 452 820 - -
Apr3g1152 931 Gene3D - 59 403 - -
Apr3g1152 931 PIRSF IGluLR_plant 3 930 IPR017103 -
Apr3g1152 931 SUPERFAMILY Periplasmic binding protein-like I 35 469 IPR028082 -
Apr3g1152 931 Gene3D - 711 823 - -
Apr3g1152 931 Gene3D - 472 587 - -
Apr3g1152 931 Gene3D - 588 709 - -
Apr3g1152 931 CDD GluR_Plant 475 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1152 Apr-Chr3 26071683 26076931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1152 36 785 Ion Channels AT1G05200 68.400 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1152 K05387 - gmx:100802782 1538.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1152 3 26071683 26076931 Apr3g1152 3 26071683 26076931 ECH
Apr2g2013 2 25467669 25473426 Apr3g1152 3 26071683 26076931 PCT
Apr3g1152 3 26071683 26076931 Apr2g2014 2 25477930 25483059 PCT