Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1149 ATGCTAGCCGGTGTTATTATTCCGGCGAGAAACATGCCATCCATGATTACAAGGATCAACAACGGTGGTGGGTTTGGATCATCTTCAGCTCTCACTCTTGGCCAGCCAAACCTAATGGAAGCTGGTCAGCTCCATCCACTGGAGATGGGTCAGAACACTTCGGAGAGTGATGTTCCTCGAATCCGTGAAGATGAGTTCGATAGTGCTACAAAGTCTGGTAGTGAAAACCATGAAGGTGCTTCTGGTGAAGACCAAGATCCTCGTCCCAAAAAGAAGCGTTATCACCGCCACACTCAACACCAGATCCAGGAAATGGAAGCTTTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAACTAAGTAGAGAGTTAGGGTTAGAACCATTGCAGGTTAAGTTTTGGTTCCAGAACAAGCGCACTCAAATGAAGACTCAACATGAGCGCCATGAGAACACACAGCTTAGAGCTGAAAATGAGAAGCTTCGTGCAGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCCTCGTGTCCTAATTGTGGTGGACCAACCGCTATAGGAGAAATGTCATTCGATGAACATCACTTGAGGCTTGAAAATGCAAGGCTAAGAGAAGAGATTGATCGGATTTCAGCAATTGCTGCCAAGTATGTAGGGAAGCCAGTGGTGAACTATTCAAATATTTCCCCTTCTCTCCCTCCTCGTCCACTAGAACTTGGAGTTGGTGCTGGTTTTGGTGGCCAGCCAGGGATTGGTGTGGACATGTATGGAGCTGGAGATCTTCTGAGGTCAATTAGTGGACCCACCGAAGCTGATAAACCAATAATAATAGAGCTAGCTGTTGCAGCTATGGAGGAGCTCATTGGAATGGCACAAATGGGTGAGCCTCTTTGGTTAACTACCCTTGATGGCACTGCCACTATGCTAAATGAGGATGAATACATCAGGTCCTTTCCCCGAGGAATTGGCCCAAAACCTACTGGCTTCAAATGTGAAGCTTCAAGAGAAACCGCTGTTGTTATCATGAACCATGTCAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTTTTCTCTGGCATAGTCTCAAGAGCCATGACTCTAGAAGTGCTATCAACAGGGGTGGCCGGGAACTACAATGGTGCCTTACAAGTGATGACAGCAGAATTACAACTTCCTACACCTCTTGTGCCAACTCGTGAGAGTTATTTTGTGAGGTATTGTAAACAACATGCCGATGGGACTTGGGCTGTTGTGGATGTGTCTTTGGATAATTTGCGCCCAAGTCCTTCAGCGAGATGTAGAAGAAGACCTTCTGGTTGCTTAATTCAAGAAATGCCAAATGGATATTCAAAGGTCACATGGGTTGAGCATGTGGAAGTGGATGATAGAGGAGTTCATAGTCTTTACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGCGCAAAACGTTGGGTTGCAACCTTAGATCGACAGTGTGAAAGGCTTGCTAGCGCCATGGCAACAAACATTCCCACCGTAGATGTTGGCGTGATAACAAACCAAGAAGGGAGGAAGAGTATGATGAAACTGGCTGAAAGAATGGTAATAAGCTTTTGTGCTGGAGTGAGTGCTTCCACTGCTCACACATGGACTACACTCTCTGGGACCGGAGCCGATGATGTAAGAGTGATGACTCGAAAGAGTGTAGATGACCCTGGAAGACCCCCTGGCATCGTTCTCAGTGCTGCCACTTCTTTTTGGCTACCAGTTCCACCCAAAAGGGTTTTTGACTTTCTCCGTGACGAGAACTCTAGAAATGAGTGGGATATTCTTTCCAATGGTGGAGTTGTCCAAGAAATGGCACACATTGCAAATGGCCGTGATACTGGAAACTGTGTGTCTCTACTTCGAGTAAATAGTGCCAATTCAAGCCAGAGCAACATGTTGATTTTACAAGAGAGTTGCACCGATTCGACGGGCTCTTTTGTGATTTATGCTCCAGTAGATATTGTGGCCATGAATGTAGTTCTAAATGGAGGAGACCCAGATTATGTTGCCCTTCTTCCTTCAGGGTTTGCTATTCTCCCAGATGGGACAACAGTGCATGGAAGTGGCATTGGTGAAACTGCGCCTGGTGGATCTCTTTTAACTGTTGCATTTCAAATATTGGTTGATTCAGTTCCAACTGCTAAGCTTTCTCTTGGATCTGTTGCTACTGTTAATAATCTTATTGCCTGCACTGTTGAGAGAATCAAGGCTTCCTTATCTGGTGAATCAGCTTGA 2283 0.4577 MLAGVIIPARNMPSMITRINNGGGFGSSSALTLGQPNLMEAGQLHPLEMGQNTSESDVPRIREDEFDSATKSGSENHEGASGEDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRAENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLELGVGAGFGGQPGIGVDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTATMLNEDEYIRSFPRGIGPKPTGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTVHGSGIGETAPGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGESA* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1149 760 CDD homeodomain 91 149 IPR001356 GO:0003677
Apr3g1149 760 Pfam Homeodomain 91 146 IPR001356 GO:0003677
Apr3g1149 760 Gene3D - 329 498 IPR023393 -
Apr3g1149 760 SMART HOX_1 89 152 IPR001356 GO:0003677
Apr3g1149 760 Gene3D - 76 165 - -
Apr3g1149 760 CDD START_ArGLABRA2_like 276 500 - -
Apr3g1149 760 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 46 757 - -
Apr3g1149 760 Coils Coil 147 174 - -
Apr3g1149 760 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 46 757 IPR042160 -
Apr3g1149 760 SUPERFAMILY Bet v1-like 272 503 - -
Apr3g1149 760 Pfam START domain 282 501 IPR002913 GO:0008289
Apr3g1149 760 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Apr3g1149 760 MobiDBLite consensus disorder prediction 66 99 - -
Apr3g1149 760 SMART START_1 281 501 IPR002913 GO:0008289
Apr3g1149 760 SUPERFAMILY Homeodomain-like 78 148 IPR009057 -
Apr3g1149 760 MobiDBLite consensus disorder prediction 66 90 - -
Apr3g1149 760 ProSiteProfiles START domain profile. 272 504 IPR002913 GO:0008289
Apr3g1149 760 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Apr3g1149 760 SUPERFAMILY Bet v1-like 520 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1149 Apr-Chr3 26047950 26055275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1149 35 760 Homeobox Transcription Factor Family AT1G05230 78.338 0.0 1166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr3g1149 START 1e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1149 K09338 - gmx:100782260 1424.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1149 3 26047950 26055275 Apr3g1149 3 26047950 26055275 ECH
Apr2g2011 2 25452765 25460208 Apr3g1149 3 26047950 26055275 PCT