Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1144 ATGATTCAAGATCCATTTGCTGAGGCAAATGCTGAGGACTCAGGAGCTGGGGCAAAAGAGTATGTTCATGTTCGTGTTCAACAGCGGAATGGAAGGAAAAGCCTAACAACTGTTCAAGGATTAAAGAAAGAGTACAGCTATAGCAAGATACTCAAAGACCTGAAGAAAGAATTCTGCTGTAATGGTACTGTTGTCCAGGACCCTGAGTTGGGCCAGGTCATACAACTTCAGGGAGATCAAAGAAAGAATGTTTCTACTTTCCTTGTGCAGGCTGGCATAGTAAAGAAGGAGCATATCAAGATTCATGGTTTCTAA 315 0.4222 MIQDPFAEANAEDSGAGAKEYVHVRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKIHGF* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1144 104 SUPERFAMILY eIF1-like 4 104 IPR036877 GO:0003743|GO:0006413
Apr3g1144 104 Gene3D - 1 104 - -
Apr3g1144 104 Pfam Translation initiation factor SUI1 19 93 IPR001950 GO:0003743|GO:0006413
Apr3g1144 104 ProSiteProfiles Translation initiation factor SUI1 family profile. 22 92 IPR001950 GO:0003743|GO:0006413
Apr3g1144 104 CDD eIF1_SUI1 20 103 IPR005874 GO:0003743
Apr3g1144 104 PIRSF Transl_init_SUI1_Euk 1 104 IPR005874 GO:0003743
Apr3g1144 104 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 3 104 - -
Apr3g1144 104 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 3 104 - -
Apr3g1144 104 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 2 104 IPR005874 GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1144 Apr-Chr3 25991949 25993225 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1144 4 104 Eukaryotic Initiation Factors Gene Family AT1G54290 93.069 4.55e-68 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1144 K03113 - gmx:100784390 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1144 3 25991949 25993225 Apr3g1144 3 25991949 25993225 ECH