Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1118 ATGAAGAAGTGCGAGCTGTGCAAGATTCCGGCGAGGGTTTTCTGTGAGTCGGACCAAGCTAGCTTATGCTGGGACTGCGACGCTAAGGTTCATGGCGCCAACTTCTTGGTCGCTAGGCACTCCAGGACCCTTCTCTGCCACTCTTGCCGTTCTCCCACGCCGTGGAAGGCCTCCGGCGCCAGCCTCGGAAGCGCCGTCACCGTCTGTGACCGTTGTGCCGCAGGCACCAGCGAAGAAGAAGAACCGGAAGAGAGCGAAGGAGGTAATGAGGAGGAAATAGACGACGACGACGAAGATGTCGCCGGCGACGAGGGCGGAGACAATCAAGTCGTGCCTTGGTCCTCGACGCCGCCTCCGCCGCCAGCGAGTTCCTCTAGCAGCGAATGGTCGTCGGTTAGCACGTGCAGAAGAAACGGCGTCAACAGCAGAAACGGCGATGGAGATGGAGATATTTCTGTTTCTGAACCCGTAACGACAACAGTGTCGTTGAAACGACAGCGTCCGGATGAAGCTTCTGATCGTGATCTTCAGGAGGGTCATAACGGTTGGGCTTCTCAGCGGAGGTGCGGTGGGGAGTGGAGAGAGGAGGTGGCGTGTGGCGGAGAACCACCGTCGAAGGAGTGA 624 0.5865 MKKCELCKIPARVFCESDQASLCWDCDAKVHGANFLVARHSRTLLCHSCRSPTPWKASGASLGSAVTVCDRCAAGTSEEEEPEESEGGNEEEIDDDDEDVAGDEGGDNQVVPWSSTPPPPPASSSSSEWSSVSTCRRNGVNSRNGDGDGDISVSEPVTTTVSLKRQRPDEASDRDLQEGHNGWASQRRCGGEWREEVACGGEPPSKE* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1118 207 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 189 - -
Apr3g1118 207 MobiDBLite consensus disorder prediction 125 165 - -
Apr3g1118 207 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Apr3g1118 207 MobiDBLite consensus disorder prediction 166 181 - -
Apr3g1118 207 SMART bboxneu5 1 45 IPR000315 GO:0008270
Apr3g1118 207 MobiDBLite consensus disorder prediction 189 207 - -
Apr3g1118 207 CDD Bbox1_BBX-like 3 45 - -
Apr3g1118 207 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Apr3g1118 207 PANTHER - 1 189 - -
Apr3g1118 207 MobiDBLite consensus disorder prediction 73 207 - -
Apr3g1118 207 MobiDBLite consensus disorder prediction 77 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1118 Apr-Chr3 25755570 25756895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1118 2 120 C2C2-CO-like Transcription Factor Family AT5G54470 45.185 3.73e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr3g1118 zf-B_box 6.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1118 - - vun:114168631 174.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1118 3 25755570 25756895 Apr3g1118 3 25755570 25756895 ECH
Apr2g1978 2 25179670 25181026 Apr3g1118 3 25755570 25756895 PCT