Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1114 ATGAAGAAAAAACCACAGTTATGGTTGTCTCTCCTCATCACATGCTTCGCTTTCCACACCTACACCTCCCTTGCTGCTTTGACAACCATCTCAGCAAACCAATCTCTTTCTGGGGATCAAACTCTTGTCTCCGAAGGTGGCAGTTTTGAATTGGGTTTCTTCAACAAAGGTAACAAATCTAAATACTACATAGGCATGTGGTACAAAATGGTATCAGAAAGAACATATGTTTGGGTAGCAAATAGAGACAAACCAGTTTCTGATAAGAATTCTGCCAAGTTAACAATATCAGGTGGTAATTTAGTGCTCTTTGACCAGTCTCAAAATCTAGTTTGGTCAACCAATTTAAGTTCTCCTAGCTCAGGTTCTGTGGTAGCTACACTTCTAGATACTGGGAATCTTGTACTAAGTAATAGGCCTAATGCATCAGTATCAGATGCTATGTGGCAGAGTTTTGATCATCCAACAGATACATGGCTTCCTGGTGGCAAAATAAGATTGGATAACAAAACAAAGAAGCCCCAATATCTCACTTCATGGAAGAACAGTGATGATCCTGCCACAGGTTTATTCTCTCTAGAACTAGACCCTAATGGAAGCACTGCATATTTGATTCTTTGGAATAAGTCTGTACAGTATTGGACAAGTGGTGCTTGGAATGGACACATTTTCAGCTTGGTTCCTGAAATGAGGTTAAACTATATATACAATTTTACCTTTCAGTCTAATGAGAATGAGAGCTACTTCACCTACTCCTTATATAATACTTCTCTTATATCCCGTTTTGTGATGGATGTCTCTGGGCAGATCAAACAACTTTCTTGGCTTGAAAATACTCAGCAATGGAATTTGTTTTGGTCACAGCCAAGGCAACAATGTGAAGTTTATGCCTTTTGTGGTGAATTTGGGAGCTGCACTGAGAACTCCATGCCATATTGTAATTGTTTAACTGGGTATGAGCCAAGGTCACAATCTGATTGGGATCTTGGGGATCACTCAGGTGGGTGTGTGAGAAAAACAAAGTTTCAGTGCGAGACCTCAAATCCTTCTAACAAAGACAAGGACAGATTCCTTCCCATTCCCAACATGGCATTGCCTAATCAATCACAGTCTGTGGGAGCTGGGAATGCTGGTGAATGTGAATCAACTTGTTTGAGTAACTGTTCTTGTACTGCATATGCTTATGGCACCACTGGATGCTCAATATGGAATGGTGATCTCTTGAATCTTCAACAGCTTTCTCAAGATGATAGTAGTGGACAGACTTTGTTTCTCAAACTTGCAGCATCTGAGTTTCACGATGATAAAAGCAAAAATGGAATGATAATTGGTGTTGTTGCTGGTGTTGTTGGTGGCATAGTGGTTCTTCTCCTAGTCGTTGTTTTTGTCATGTTGAGGCGCAGAAAGAGATTTATAGGCACTGGAACATCAGTGGAGGGTTCATTGGTGGCATTTGGGTACAGGGATTTGCAAAATGCTACAAAGAATTTCTCAGAGAAACTTGGAGGAGGGGGCTTTGGTTCTGTCTTCAAAGGAACATTGTCTGATTCAAGTGTCATAGCAGTGAAGAAGCTTGAAAGCATTAGCCAAGGTGAGAAACAGTTCAGATCAGAAGTGAGTACAATTGGGACAGTCCAACATGTCAACCTTGTTAGGCTTCGTGGGTTTTGTTCTGAAGGTGCAAGGAAACTGCTTGTTTATGATTACATGCCAAATGGCTCCTTGGATTCCAAACTGTTTAAGGAAGATAACTCCAAGGTGTTGGATTGGAAAATGAGGTACCAAATTGCTCTTGGAACAGCAAGGGGTTTGACTTATCTCCATGAGAAGTGTAGAGACTGTATCATACACTGTGATGTAAAGCCAGAAAACATTCTCCTAGATGCTGATTTTGTTCCAAAGGTGGCAGACTTTGGTCTTGCAAAGCTGGTTGGAAGGGACTTCAGCAGGGTCCTTACTACCATGAGAGGAACAAGAGGGTATCTTGCCCCAGAGTGGATTTCAGGAGTGGCTATCACAGCCAAAGCTGATGTTTACAGCTATGGAATGATGCTTTTTGAGTTTGTGTCAGGTAGGAGAAACTCTGAGCCATCAGAAGATGGACAAGTTAGGTTCTTTCCTACATTGGCTGCAAACATGGTGCACCATGGAGGCAGCAATGTGCTTAGCTTGTTGGACCCTAGGTTGGAGGGAAATGCTGACATTGAAGAGGTCATTAGAGTGATAAAACTTGCTTCTTGGTGTGTGCAAGATGATGAAACTCATAGGCCATCCATGGGTCAGGTAGTTCAAATCCTTGAAGGGGTCTTGGATGTGACTCTGCCTCCAATTCCAAGGTCCCTTCAAGCATTTATTGACAACCATGAGAACATAGTTTTCTTCACTGATACCAGCTCCACACAGAGTTCACAGGTAAAGAGCAATGTATCAACAGGATCCTCTCAAGCCAAAAGCAACATCTCATCCGATGACCCCTTTTCCTCAAGACAAAATTAG 2496 0.4191 MKKKPQLWLSLLITCFAFHTYTSLAALTTISANQSLSGDQTLVSEGGSFELGFFNKGNKSKYYIGMWYKMVSERTYVWVANRDKPVSDKNSAKLTISGGNLVLFDQSQNLVWSTNLSSPSSGSVVATLLDTGNLVLSNRPNASVSDAMWQSFDHPTDTWLPGGKIRLDNKTKKPQYLTSWKNSDDPATGLFSLELDPNGSTAYLILWNKSVQYWTSGAWNGHIFSLVPEMRLNYIYNFTFQSNENESYFTYSLYNTSLISRFVMDVSGQIKQLSWLENTQQWNLFWSQPRQQCEVYAFCGEFGSCTENSMPYCNCLTGYEPRSQSDWDLGDHSGGCVRKTKFQCETSNPSNKDKDRFLPIPNMALPNQSQSVGAGNAGECESTCLSNCSCTAYAYGTTGCSIWNGDLLNLQQLSQDDSSGQTLFLKLAASEFHDDKSKNGMIIGVVAGVVGGIVVLLLVVVFVMLRRRKRFIGTGTSVEGSLVAFGYRDLQNATKNFSEKLGGGGFGSVFKGTLSDSSVIAVKKLESISQGEKQFRSEVSTIGTVQHVNLVRLRGFCSEGARKLLVYDYMPNGSLDSKLFKEDNSKVLDWKMRYQIALGTARGLTYLHEKCRDCIIHCDVKPENILLDADFVPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFVSGRRNSEPSEDGQVRFFPTLAANMVHHGGSNVLSLLDPRLEGNADIEEVIRVIKLASWCVQDDETHRPSMGQVVQILEGVLDVTLPPIPRSLQAFIDNHENIVFFTDTSSTQSSQVKSNVSTGSSQAKSNISSDDPFSSRQN* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1114 831 SMART serkin_6 495 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1114 831 CDD B_lectin 33 155 IPR001480 -
Apr3g1114 831 Gene3D - 23 152 IPR036426 -
Apr3g1114 831 Gene3D Phosphorylase Kinase; domain 1 462 569 - -
Apr3g1114 831 SUPERFAMILY Protein kinase-like (PK-like) 481 799 IPR011009 -
Apr3g1114 831 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 5 796 - -
Apr3g1114 831 CDD STKc_IRAK 501 768 - -
Apr3g1114 831 CDD PAN_AP_plant 350 428 - -
Apr3g1114 831 SMART blect_4 33 155 IPR001480 -
Apr3g1114 831 ProSiteProfiles Protein kinase domain profile. 495 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1114 831 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 5 796 - -
Apr3g1114 831 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 220 IPR036426 -
Apr3g1114 831 Pfam D-mannose binding lectin 75 181 IPR001480 -
Apr3g1114 831 Pfam Protein kinase domain 498 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1114 831 Gene3D Transferase(Phosphotransferase) domain 1 570 773 - -
Apr3g1114 831 ProSiteProfiles Bulb-type lectin domain profile. 27 149 IPR001480 -
Apr3g1114 831 ProSiteProfiles PAN/Apple domain profile. 344 428 IPR003609 -
Apr3g1114 831 SMART ntp_6 352 427 IPR003609 -
Apr3g1114 831 Pfam S-locus glycoprotein domain 214 322 IPR000858 GO:0048544
Apr3g1114 831 Pfam PAN-like domain 351 409 IPR003609 -
Apr3g1114 831 MobiDBLite consensus disorder prediction 803 831 - -
Apr3g1114 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Apr3g1114 831 PIRSF SRK 2 817 IPR024171 GO:0004674
Apr3g1114 831 ProSitePatterns Protein kinases ATP-binding region signature. 501 524 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1114 Apr-Chr3 25732151 25735305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1114 445 776 Receptor kinase-like Gene Family AT5G20050 41.144 1.25e-78 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Apr3g1114 Pkinase 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1114 - - gmx:100782119 1393.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1114 3 25732151 25735305 Apr3g1114 3 25732151 25735305 ECH
Apr2g1976 2 25156357 25159163 Apr3g1114 3 25732151 25735305 PCT