Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1111 ATGGTGAGAACCCCCGTGTGTGACAAAAATGGACTCAAGAAAGGAACATGGACTCCGGAGGAAGACAAGAAGTTGGTTGATTATATTACTAGGTATGGCCACTGGAACTGGCGTCTTCTCCCCAAGTTCGCAGGTCTTGCCAGATGTGGAAAGAGTTGCAGACTTAGGTGGCTGAATTACCTAAGGCCAAACCTCAAAAGAGGGAACTACACCCAAGAAGAAGAGGAAACTATTATCAAGCTGCATCAGGATCTGGGTAACAGATGGTCTGCCATAGCTGCTCAGATGCCAGGAAGAACAGACAATGAAATAAAAAACCATTGGCACACAAACCTCAAGAAACGATCTCAAGAGTATTCAGTCGCAGAAACTGAGGTATCCAAGTCAAAGGACCAATCCCCAACTCAACTAAATTCAGATCCTTTCCAAAGCTTTCAAACCACACAAGAATCTTCACCATTGTCTCAGCATTCTTCCTCCACAACCTCAGGGTCTACCAGCAACGAAAACCTCTCTCTCGAAGATGAATTTGCCTTTCTTGATGCAGACGCTGGTCTTGTGAGTGGAAACTTCTGGGTAGAACCATATCTGCTTGAGCTTGATATTTCCTACGACTTGAGTGAACCCGAGCACTTTTGTCCAGTCTTTGATGCAGAACTTTGGAGCTATGATAACTAA 678 0.4469 MVRTPVCDKNGLKKGTWTPEEDKKLVDYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNLKRGNYTQEEEETIIKLHQDLGNRWSAIAAQMPGRTDNEIKNHWHTNLKKRSQEYSVAETEVSKSKDQSPTQLNSDPFQSFQTTQESSPLSQHSSSTTSGSTSNENLSLEDEFAFLDADAGLVSGNFWVEPYLLELDISYDLSEPEHFCPVFDAELWSYDN* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1111 225 CDD SANT 69 112 IPR001005 -
Apr3g1111 225 MobiDBLite consensus disorder prediction 119 169 - -
Apr3g1111 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr3g1111 225 CDD SANT 16 61 IPR001005 -
Apr3g1111 225 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 169 - -
Apr3g1111 225 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr3g1111 225 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr3g1111 225 Gene3D - 68 140 - -
Apr3g1111 225 MobiDBLite consensus disorder prediction 126 169 - -
Apr3g1111 225 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr3g1111 225 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr3g1111 225 SMART sant 13 63 IPR001005 -
Apr3g1111 225 SMART sant 66 114 IPR001005 -
Apr3g1111 225 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 169 - -
Apr3g1111 225 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr3g1111 225 Gene3D - 13 66 - -
Apr3g1111 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1111 Apr-Chr3 25682266 25684984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1111 1 203 MYB Transcription Factor Family AT1G06180 51.942 1.87e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr3g1111 Myb_DNA-binding 8.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1111 K09422 - gmx:100778518 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1111 3 25682266 25684984 Apr3g1111 3 25682266 25684984 ECH
Apr3g1111 3 25682266 25684984 Apr2g1975 2 25136636 25138729 PCT