Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1110 ATGGTGAGAACCCCTTCCTGTGACAAAAGTGGACTCAGGAAAGGTACTTGGACTCCGGAGGAAGATAGGAAGTTAATTGCTTATGTCACTAGGTATGGTTGTTGGAATTGGCGCCAACTTCCCAGGTTTGCAGGCCTGGCAAGGTGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTAAGGCCGAACATCAAAAGAGGAAACTTCACTCAAGAAGAAGAAGAGCGCATCATTAGAATGCACAAAAAACTTGGTAATAGATGGTCTGCCATTGCAGCTGAGTTACCAGGAAGAACTGATAATGAAATAAAAAATCATTGGCACACAACCCTCAAGAAGAGATTTCAAGAGAACACTGTAACAAATGAAGAAGTCAAAGCCTCCAAAACAAAAGATAAAGAATCCAAGAAAGGGAAAGACACGGTGTCCAACAATGGTGTTACAGTTTTGCAAGTTAATCCTCCAGCTACTTCACAGATCTCAGACAATACAGGTTCATTATCACCACTATCATCCTCTAGCGACTTCTCATCCATAAGCTCAGATCATTCCACAGCAGCCAGTAACGAAAATTTTATGTTTGAAGATGACCTTGGTTTTCTGGATGAATTCACAGAGCCAGTGAGTGAGAATTTCTGGACAGACCTATATCTGGACGACATTTCCAACAACACAACAATGCCAAGTGATATTAACGGTGCTTTTGAAAGTACAGATGCTACCCAGATCCTTGATTCTCGTACACTATCACCCCATCAATCTACCAGCGAAAGCATGGTTGTGGAGAATGAGTTTGGAAGCTTTCTCGATGCATACACAGAACCAACAGTAGATAATTTTTGGACACAGCCATATGTTGCTGACATGTCCCATGTTCCAAGCGAACTACTGGTCCCCTCCGTGGCAGAATCTGAATATTTTTCTACCGTATACGACGCTGATCTGTGGGGTCAAAGTAATTTGTATGATGAACACCTTAGCTTATTCTAA 993 0.4179 MVRTPSCDKSGLRKGTWTPEEDRKLIAYVTRYGCWNWRQLPRFAGLARCGKSCRLRWMNYLRPNIKRGNFTQEEEERIIRMHKKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRFQENTVTNEEVKASKTKDKESKKGKDTVSNNGVTVLQVNPPATSQISDNTGSLSPLSSSSDFSSISSDHSTAASNENFMFEDDLGFLDEFTEPVSENFWTDLYLDDISNNTTMPSDINGAFESTDATQILDSRTLSPHQSTSESMVVENEFGSFLDAYTEPTVDNFWTQPYVADMSHVPSELLVPSVAESEYFSTVYDADLWGQSNLYDEHLSLF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1110 330 CDD SANT 69 112 IPR001005 -
Apr3g1110 330 CDD SANT 16 61 IPR001005 -
Apr3g1110 330 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr3g1110 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr3g1110 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr3g1110 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 262 - -
Apr3g1110 330 MobiDBLite consensus disorder prediction 115 141 - -
Apr3g1110 330 Gene3D - 14 66 - -
Apr3g1110 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr3g1110 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr3g1110 330 MobiDBLite consensus disorder prediction 115 183 - -
Apr3g1110 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr3g1110 330 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 262 - -
Apr3g1110 330 MobiDBLite consensus disorder prediction 142 183 - -
Apr3g1110 330 Gene3D - 68 144 - -
Apr3g1110 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr3g1110 330 SMART sant 66 114 IPR001005 -
Apr3g1110 330 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1110 Apr-Chr3 25672537 25673867 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1110 1 224 MYB Transcription Factor Family AT2G31180 47.768 1.75e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr3g1110 Myb_DNA-binding 2.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1110 K09422 - gmx:100777107 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1975 2 25136636 25138729 Apr3g1110 3 25672537 25673867 PCT
Apr3g1110 3 25672537 25673867 Apr2g1974 2 25114139 25116149 PCT