Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1109 ATGGTAAGAGCTGCTTTCTATGACAAAAATGGACTGAAGAAAGGTGCATGGAGTAGAGAAGAGGATGAGAGGTTAAGAGTTTTTGTTCAGAAACATGGTCATTCTAATTGGCGTCAACTCCCCAAGTTTGCAGGTTTAGCAAGGTGTGGAAAAAGTTGCAGGCTTCGTTGGTTGAATTACTTGAAGCCAAATCTAAAACATGGGAACTTCACCAAAGAGGAAGAAGAAATAATCATCAAATTACACCAAGAATTTGGAAATAGATGGTCCGTGATTGCTGAAAAACTGCCTGGAAGAACGGACAATGAGATAAAGAATCATTGGCATAGCCACATAAAAAAGAGCTTAAAGAGCCACGAGATCACACCATATGTGTCCAAGATAGATGATAACAGTGTTGAGGAAAATTTAAATGAGACTAATGAGTTTGTAAAATCTAAAAGCCCATGTGCTGATGTTGGAGATAGCTTATATCATATTCTAGAAAGCTCGTTGACAGTGTCCACCGAAACTTCAGAAGGCGACAACACCTCTAACGTTGCACAATCAACCGTAAACTGCTCCATATCAAAAGAAGACACTGCTCCTCCATTGGTAACATACGAAGAATTCATTGGCGATTTTTGGACTCAACCATTCCTCGTAGAGGATCAGGATACATATACTGATGAGATATGTAATGCTGAATCATTGATTTTGAATTTCGATGGTACATATTTGTTGTAG 726 0.3871 MVRAAFYDKNGLKKGAWSREEDERLRVFVQKHGHSNWRQLPKFAGLARCGKSCRLRWLNYLKPNLKHGNFTKEEEEIIIKLHQEFGNRWSVIAEKLPGRTDNEIKNHWHSHIKKSLKSHEITPYVSKIDDNSVEENLNETNEFVKSKSPCADVGDSLYHILESSLTVSTETSEGDNTSNVAQSTVNCSISKEDTAPPLVTYEEFIGDFWTQPFLVEDQDTYTDEICNAESLILNFDGTYLL* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1109 241 PANTHER MYB-RELATED PROTEIN 308-LIKE 1 221 - -
Apr3g1109 241 CDD SANT 69 112 IPR001005 -
Apr3g1109 241 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr3g1109 241 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr3g1109 241 CDD SANT 16 61 IPR001005 -
Apr3g1109 241 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 221 - -
Apr3g1109 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr3g1109 241 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Apr3g1109 241 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr3g1109 241 SMART sant 66 114 IPR001005 -
Apr3g1109 241 SMART sant 13 63 IPR001005 -
Apr3g1109 241 Gene3D - 68 142 - -
Apr3g1109 241 Gene3D - 13 66 - -
Apr3g1109 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr3g1109 241 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1109 Apr-Chr3 25661734 25663434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1109 1 123 MYB Transcription Factor Family AT4G09460 60.976 2.42e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr3g1109 Myb_DNA-binding 3.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1109 K09422 - gmx:100782270 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1109 3 25661734 25663434 Apr3g1109 3 25661734 25663434 ECH