Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1108 ATGGTAAGAGCTCCTTATTTTGATAAAAATGGAATAAAGAAAGGTGCATGGAGTGAGGAAGAGGATCAAAGGCTCCTAGCTTACATTGAAAGATATGGCCATCCTAATTGGCGTCAACTCCCCAAGTTTGCAGGGTTGGCCAGATGTGGAAAGAGTTGCAGGCTTCGTTGGATGAATTACCTGCGGCCAAATCTTAAACGAGGAAACTATACCCAGAAGGAAGAGCAAATAATCACGGATTTGCATAAAAAGCATGGAAATAAATGGTCTCTGATTGCTGAGAACTTACCAGGAAGAACAGACAACGAGATAAAGAACTATTGGCACAGCCACCTAAAGAAGTTCTTGAGGCGCAATGAGAACACAACATGTCATGAGTTGAAATCTGAGTATATAGAATTTGAAGGCCCAATCAGCGAAGGTGTTAGTGTTGATTCCCACCACATTTTGGAAAGTTCAGTGTCCATGTCTTCGGAAACTTCCTACCCTGAAGACAACTCACCCTCCTTTTCCTCTAGTCATAGGGAATCAACCTTAAACTTGTCAAGGGAAGAAGATAGTGTTGCTTCATGGGAAACATTGGATGCATTTAGTAGTAATTTTTGGACTGAACCCTTTATTTCAGAAAACGCATTGGATCAGAATTACTTTCCCATTTCCTGTTATGGAGCAGAGAGAGAGGAGCCGTTTTTCTTATGGTAA 702 0.4131 MVRAPYFDKNGIKKGAWSEEEDQRLLAYIERYGHPNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNYTQKEEQIITDLHKKHGNKWSLIAENLPGRTDNEIKNYWHSHLKKFLRRNENTTCHELKSEYIEFEGPISEGVSVDSHHILESSVSMSSETSYPEDNSPSFSSSHRESTLNLSREEDSVASWETLDAFSSNFWTEPFISENALDQNYFPISCYGAEREEPFFLW* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1108 233 Gene3D - 7 67 - -
Apr3g1108 233 CDD SANT 69 112 IPR001005 -
Apr3g1108 233 CDD SANT 16 61 IPR001005 -
Apr3g1108 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr3g1108 233 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr3g1108 233 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr3g1108 233 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 224 - -
Apr3g1108 233 PANTHER MYB TRANSCRIPTION FACTOR 1 224 - -
Apr3g1108 233 SMART sant 13 63 IPR001005 -
Apr3g1108 233 SMART sant 66 114 IPR001005 -
Apr3g1108 233 Gene3D - 69 132 - -
Apr3g1108 233 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr3g1108 233 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr3g1108 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr3g1108 233 MobiDBLite consensus disorder prediction 155 177 - -
Apr3g1108 233 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1108 Apr-Chr3 25654445 25655702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1108 1 211 MYB Transcription Factor Family AT2G31180 45.540 3.53e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr3g1108 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1108 K09422 - gmx:100781032 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1973 2 25105159 25106530 Apr3g1108 3 25654445 25655702 PCT