Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1074 ATGGTTAACAACTTGTGTTGTTCTCTCGTTCTTTTATTTTTATTTTTAGCTTTATGGGGCCTAACCAAGGAAGAGGAAGATTCATTGCTTGGGCAAGTTGAAATATGGAAGTACATGACAAGCTTCACCGACTCTGTGGCCTTGAAAAGCGTTGTGGAGTTGCGTATAGCTGACATAATAGACCGTTATGGTAAACCACTATCCTTGTCAAAAATTGTGGAGAACATAGAAGATGCACCCTCCCCAGATACCTCTCTGCTGGAGAGAGTGATGAGAGTGATGGTGCGTAGAAAGATCTTCAGTGCAGAGAAGTCAGAGAATGGAGAAACCCTTTATGGCTTGACACGTGCTTCTAAATGGATCCTAAGGGACACAAAAATGACCTTATCACCCATGTTGCTGTTAGAGAACCACCCAATTCACATAAGCCCTGCTCACTATATTAGTGACATTATTAGAGAAGGAACGAAAAATGGCACTGCTTTCTTTAGGTGCCATGGACATGAGCAATTTGATATGACTGGTTTGGATCCTGAATATAACAGGTTGTTCAATGAGGGCATGGTGTGCACTGCCAGGGTTGTGTCCAAGGCTGTTATCAATGGATACAAAGATGGGTTTAACAAGATTAAGTCTTTGGTTGATGTAGGAGGTGGTCTTGGAGGGTCACTCTCTGAGATTGTCAGAGCCTATCCCCACATCAAAGGCATTAACTTTGATTTGCCTCATGTTGTTGCCACTGCACCTAACTATGATGGAATCACCCATGTAGGAGGCGACATGTTCCAGTCCATTCCTAGTGCTGATGCTATTTACATGAAGTGGATTCTTCATGACTGGAGCGATGAACACTGCATAAAGATTTTAAAGAACTGCAGGAAGGCAATACCGGAGAAGACCGGAAAGGTGATAATTGTGGACCATGTGCTGCGACCCGAAGGGAATGAACTATTTACTGACGTCGGCATTGCATTTGACATGATGCTTCTTGCACACAATGCTGGTGGCAAAGAGAGGACTGAGGAGAATTGGAAGTGGCTATTTAAAGAAACTGGATTCGCTCGATACAACATCATCAAGATTAATGCTTTGCCATCCATCATTGAGGCTTTTCCAGTCTGA 1122 0.4323 MVNNLCCSLVLLFLFLALWGLTKEEEDSLLGQVEIWKYMTSFTDSVALKSVVELRIADIIDRYGKPLSLSKIVENIEDAPSPDTSLLERVMRVMVRRKIFSAEKSENGETLYGLTRASKWILRDTKMTLSPMLLLENHPIHISPAHYISDIIREGTKNGTAFFRCHGHEQFDMTGLDPEYNRLFNEGMVCTARVVSKAVINGYKDGFNKIKSLVDVGGGLGGSLSEIVRAYPHIKGINFDLPHVVATAPNYDGITHVGGDMFQSIPSADAIYMKWILHDWSDEHCIKILKNCRKAIPEKTGKVIIVDHVLRPEGNELFTDVGIAFDMMLLAHNAGGKERTEENWKWLFKETGFARYNIIKINALPSIIEAFPV* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1074 373 Gene3D - 21 121 IPR036388 -
Apr3g1074 373 SUPERFAMILY "Winged helix" DNA-binding domain 28 124 IPR036390 -
Apr3g1074 373 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 24 372 - -
Apr3g1074 373 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 370 IPR029063 -
Apr3g1074 373 PANTHER O-METHYLTRANSFERASE 24 372 IPR016461 GO:0008168
Apr3g1074 373 Pfam O-methyltransferase domain 147 354 IPR001077 GO:0008171
Apr3g1074 373 Gene3D Vaccinia Virus protein VP39 123 373 IPR029063 -
Apr3g1074 373 Pfam Dimerisation domain 47 95 IPR012967 GO:0046983
Apr3g1074 373 PIRSF O-mtase 20 373 IPR016461 GO:0008168
Apr3g1074 373 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 36 372 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1074 Apr-Chr3 25363969 25372866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1074 46 359 Monolignol Biosynthesis Gene Families AT5G54160 39.252 6.61e-78 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1074 K22588 - gmx:100800801 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1074 3 25363969 25372866 Apr3g1074 3 25363969 25372866 ECH