Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1072 ATGGATGGAGAAAAGAACAGTGGAAAATCCACCAAGGAGGGTGGTGTTGATGACACTCATCACAAGGTGATTGGTGAGAGTGAAAGCCGAGATTGGGAGAAAGATAAGGGAAAGGGTGTGGATTTAACCTCAGGGAGAAGGCAATGGAATCCGGTTTTTGATGATGTTTCAATGTTACATGAGAGGCCACTCAAGAAGATTCGAAGCCCTGAACGCCAAAATCCGAATCAACAAACATCCCCTATGCTATCTCTTCAACCTCCTTCATCAAGAATAGTGTTTCCTTTTGCTTTTGAAGGGTCTCAGCAACCAATGCCATTCCCACACCAATTTGGAATTGGAGCCACAAATTTGCCTCTTTTTCGTCCACCTGTTCAGCCAACGCAACAAATGATATCTTTTGGGCCCCAACACAACATGGGGTATCCACCATTCTTAGCCTCAGATTCTACTATTCAACACCAACACCAACAGCTTCAGCATCAGCAACAGCTTCTTCAGTATTGGAATGATGCACTGAATCTTAGTCCAAGAGGGAGGATGATGAGACCAATGTTAAGGCCTCAAACACAGCCTTTGAATGCTACTAAGCTTTATAGGGGAGTGAGGCAACGCCATTGGGGCAAATGGGTCGCTGAAATTCGTCTCCCTCGCAATAGAACTCGCCTTTGGCTTGGAACTTTTGACACTGCTGAAGATGCTGCTATGGCTTATGATCGTGAAGCTTTTAAGCTTAGAGGAGAAAATGCTAAGCTCAATTTTCCGGAACTCTTCCTTAACAAGGATAATAAACCAGAATCTTCCACAACTGCTGCAGTTTCTTCTTCCCATGATGGATCAACATCAACATCAACCCTGAACAAAAAGCAACCTGAGCCTGAACCAATTGCGGAAGAGCATAACGTGGAGGAGACGAACACTGATAGTGTGTCAGAGACATTAGCAGAAGAGAATACTGAAACTGAAGAAAGCATTTCACAGCCTCAGGAATTGGTTTGGGGAGAATGGTTCAATGCAATTCCTGCAGGTTGGGGTCCTGGCAGTCCTGTGTGGGATGATTTGGACCCCAACAATAATCTTCTCTTGCATTCACAACTTCCCTTTGTCAACCCGAATCAACAAGAGTTCCATGATGCTGATGCTGCTCAGACACAACAACAAGACAGCACAGGACCAGGTTCTTCCTCTTCCTCTTGTCCCATGAGACCCTTCTTCTGA 1218 0.4507 MDGEKNSGKSTKEGGVDDTHHKVIGESESRDWEKDKGKGVDLTSGRRQWNPVFDDVSMLHERPLKKIRSPERQNPNQQTSPMLSLQPPSSRIVFPFAFEGSQQPMPFPHQFGIGATNLPLFRPPVQPTQQMISFGPQHNMGYPPFLASDSTIQHQHQQLQHQQQLLQYWNDALNLSPRGRMMRPMLRPQTQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDNKPESSTTAAVSSSHDGSTSTSTLNKKQPEPEPIAEEHNVEETNTDSVSETLAEENTETEESISQPQELVWGEWFNAIPAGWGPGSPVWDDLDPNNNLLLHSQLPFVNPNQQEFHDADAAQTQQQDSTGPGSSSSSCPMRPFF* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1072 405 MobiDBLite consensus disorder prediction 70 87 - -
Apr3g1072 405 CDD AP2 197 257 IPR001471 GO:0003700|GO:0006355
Apr3g1072 405 Gene3D AP2/ERF domain 198 256 IPR036955 GO:0003700|GO:0006355
Apr3g1072 405 ProSiteProfiles AP2/ERF domain profile. 198 255 IPR001471 GO:0003700|GO:0006355
Apr3g1072 405 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 405 - -
Apr3g1072 405 MobiDBLite consensus disorder prediction 1 42 - -
Apr3g1072 405 PRINTS Ethylene responsive element binding protein signature 199 210 IPR001471 GO:0003700|GO:0006355
Apr3g1072 405 PRINTS Ethylene responsive element binding protein signature 221 237 IPR001471 GO:0003700|GO:0006355
Apr3g1072 405 MobiDBLite consensus disorder prediction 262 290 - -
Apr3g1072 405 Pfam AP2 domain 199 247 IPR001471 GO:0003700|GO:0006355
Apr3g1072 405 MobiDBLite consensus disorder prediction 1 88 - -
Apr3g1072 405 MobiDBLite consensus disorder prediction 292 306 - -
Apr3g1072 405 SUPERFAMILY DNA-binding domain 198 256 IPR016177 GO:0003677
Apr3g1072 405 MobiDBLite consensus disorder prediction 260 328 - -
Apr3g1072 405 MobiDBLite consensus disorder prediction 375 405 - -
Apr3g1072 405 SMART rav1_2 198 261 IPR001471 GO:0003700|GO:0006355
Apr3g1072 405 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 5 405 - -
Apr3g1072 405 MobiDBLite consensus disorder prediction 307 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1072 Apr-Chr3 25343581 25345708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1072 36 355 AP2-EREBP Transcription Factor Family AT4G28140 42.769 6.67e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr3g1072 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1072 - - gmx:100811328 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1072 3 25343581 25345708 Apr3g1072 3 25343581 25345708 ECH