Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1059 ATGGACTTAGATCGTAAGGAGGAGATTGAGCCCCAGAATAAAAACTGGAAATCTTCAAGTGATGTCATTGCAGATTCTGATAGAAATGTTTGTGGTGGCTTTGAGTGCAACATCTGTCTAGAGTGTGTTCGAGAGCCAGTAGTCACACTTTGTGGTCATCTTTATTGTTGGCCCTGCATATATAAATGGCTTCATTTTCAAAGAATCACTTTAGAAAATGAACAAGAAGAGAAGCGACAATGTCCGGTATGCAAATCGGAAGTTTCTCAATCCTCTCTAGTTCCATTATATGGCCGTGGCCCAAGCACAACATCTTCCGGAGGAAAGACTCATAAAGTAGGAATGGTCATACCACAAAGACCTAAGGGCCCCAGATTACATAATACTACATCTGTTTATTATCATCCCAATAATCCTTATCATCATTCTCAACAATTTAATTCAATTTCAAATGGTTATACTTCACCAATACTTAGCACAGGTGGTTCACTAAATAATACATTTGGAATATTTAGTGGAATGATATATGCAAGGGTTTTTGGTAATCAGATGTCAAACATATACACATATCCTAATTCATACAGTCTTTCAGAGGCCAATAACCCAAGGACCAGGAGGCATTTAATGCAAATTGATAAATCACTCAGCAGAATAAGTTTTTTCCTCCTATGCAGCCTAGTTTTATGTCTTCTCTTATTCTGA 702 0.3746 MDLDRKEEIEPQNKNWKSSSDVIADSDRNVCGGFECNICLECVREPVVTLCGHLYCWPCIYKWLHFQRITLENEQEEKRQCPVCKSEVSQSSLVPLYGRGPSTTSSGGKTHKVGMVIPQRPKGPRLHNTTSVYYHPNNPYHHSQQFNSISNGYTSPILSTGGSLNNTFGIFSGMIYARVFGNQMSNIYTYPNSYSLSEANNPRTRRHLMQIDKSLSRISFFLLCSLVLCLLLF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1059 233 ProSiteProfiles Zinc finger RING-type profile. 36 85 IPR001841 -
Apr3g1059 233 SUPERFAMILY RING/U-box 33 97 - -
Apr3g1059 233 SMART ring_2 36 84 IPR001841 -
Apr3g1059 233 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Apr3g1059 233 MobiDBLite consensus disorder prediction 99 121 - -
Apr3g1059 233 Pfam zinc-RING finger domain 35 86 IPR001841 -
Apr3g1059 233 CDD RING-HC_AtRMA_like 34 86 - -
Apr3g1059 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 105 IPR013083 -
Apr3g1059 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 7 233 - -
Apr3g1059 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 7 233 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1059 Apr-Chr3 25280854 25284070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1059 32 233 C3H Transcription Factor Family AT4G28270 39.130 3.91e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1059 K10666 - gmx:100786373 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1059 3 25280854 25284070 Apr3g1059 3 25280854 25284070 ECH