Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1050 ATGGGTTGCATATGTTCCAAGAGTTCAGCTGTAGAAGACAGCAAAGAAGGTGTGACAAACAAATTGCAAGCATATAGCACAAGGCCTTCAGAGTTGAATGTTTTGAGGTTGAGTTCAACCAAGAGGGTTGAAGGGGGTGGGGTTAAAGATTTGTTATTAGACGGTGGTGATGTGAAGGCTTCATTAGTTGACAAGAAGGTCAATGGATCAGTGCTGTTGTATGATGATCAAAATGGGAAGAAGAAAATAGAGAAGCCTGAATTGACTGTTGTTGATCATATGGGCCTTGCAAGGGTTCCAAAGGCTACAGAAGGAGAACAAGTTGCGGCAGGATGGCCTGCGTGGCTTTCTTCTGTTGCTGGTGAAGCTATTAAGGGATGGATACCGCGGAGTGCAAATACTTTTGAGAGGTTACATAAAATTGGGCAAGGAACTTACAGTACTGTTTATAAGGCACGCGATGTGACTCACCAAAAGTTTGTTGCATTGAAGAGGGTGCGTTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAATATTATAAAGTTGGAGGGGTTGATAACGTCTGAGACATCTCGCAGCTTATATCTTGTCTTTGAGTATATGGAACATGATCTTACAGGACTTGCGTCAAATCCTGACATCAAGTTCTCTGAACCACAGCTGAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTTATGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGTATCTTAAAGATTGCCGATTTTGGTTTGGCAAGTTTTTTTGACCCCCACCACAGTGTTCCATTGACGAGCCGTGTTGTAACTCTGTGGTATAGACCACCAGAGCTTTTACTTGGAGCAAATCATTATGGGGTTGCAGTGGATTTGTGGAGCACTGGTTGCATACTTGGGGAGCTATATACTGGCAGGCCAATTTTGCCAGGAAAAACAGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGTGGCTCACCATCTGAAGACTATTGGCTAAAATTGCGGTTGTCACATTCAACCGTATTCAGGCCTCCACACCATTATAGGCGATGTGTTGCGGAGACATTTAAGGAATACTCATCTACTGCAGTAAAGCTTATAGAGACCCTACTTTCTGTGGAGCCTGCACATCGAGGGACTGCAGCAGCTGCTCTGAAAAGTGAGTTCTTTACATCAGAGCCTCTGCCTTGTGATCCATCAAGTTTACCTAACTATCCTCCCAGCAAGGAGATTGATGCTAAATTACGGGATGAAGCAACTAGAAGGCAAGGAGCTGTTGGAAGTAGGGAGCAAAAAATTGTGTCAGGAGTTAGACAAGAAAAGGGACCTAGGGCCAATGTCACAGCAAGAGACAATTCTGACTCAGGCTTATCAATACAGCATGGACAACGTTATTCCATCTCAAGGAACCGAAGTGATTTGTACAATCCTCATAGGGGACCTGTATCTGGGGTTCTGGTTTTCCCACCCAAGCACTCACAAGATGTTAAAGAAATGGAAACTAATTACTCTGGGCATCTCTATAAGAGGCCTTCACATTCAGGCCCATTGGTTCCTGGTTCTGGCTGGGCAAAGAGTGGGAAGGACGTTGATGATGGGCCTCCTGTTCCAAACAGAGGGAACCTATCAAAACTTTCTGGACTAGTGGCATCTAGGACTTTGTTATCTGAAGATCAAGACGATAACAAACTTGTTCACTTACACCACAGAAAACCAATTGAAGTACGAAAATCAGGGGAATCAGCTTATGGATCAGAGTCAAGACGAAGACTGGATCAAAAACGGATTGTTGACCTGAATCAAATTGAAAATAGAAGGGTCCCAGCTGAAAAATCAACCCCGGACGGGCGAGGATCCATGGGAAACAAGATATACCTCTCTGGTCCGTTAATGGTTTCTTCAAGCAACATGGATCAGATGCTCAGAGAGCACGATCGAAAGATTCAAGAGTTTTCAAGAAGAGCAAGAATTGACAAATCAAGAGGAAGAGGGGAGAAAGTTCGTGCACGGAGAAAGTAG 2106 0.4383 MGCICSKSSAVEDSKEGVTNKLQAYSTRPSELNVLRLSSTKRVEGGGVKDLLLDGGDVKASLVDKKVNGSVLLYDDQNGKKKIEKPELTVVDHMGLARVPKATEGEQVAAGWPAWLSSVAGEAIKGWIPRSANTFERLHKIGQGTYSTVYKARDVTHQKFVALKRVRFDNLDPESVKFMAREIHVLRRLDHPNIIKLEGLITSETSRSLYLVFEYMEHDLTGLASNPDIKFSEPQLKCYMQQLLSGLDHCHSYGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHHSVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLSHSTVFRPPHHYRRCVAETFKEYSSTAVKLIETLLSVEPAHRGTAAAALKSEFFTSEPLPCDPSSLPNYPPSKEIDAKLRDEATRRQGAVGSREQKIVSGVRQEKGPRANVTARDNSDSGLSIQHGQRYSISRNRSDLYNPHRGPVSGVLVFPPKHSQDVKEMETNYSGHLYKRPSHSGPLVPGSGWAKSGKDVDDGPPVPNRGNLSKLSGLVASRTLLSEDQDDNKLVHLHHRKPIEVRKSGESAYGSESRRRLDQKRIVDLNQIENRRVPAEKSTPDGRGSMGNKIYLSGPLMVSSSNMDQMLREHDRKIQEFSRRARIDKSRGRGEKVRARRK* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1050 701 Gene3D Transferase(Phosphotransferase) domain 1 218 457 - -
Apr3g1050 701 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Apr3g1050 701 MobiDBLite consensus disorder prediction 676 693 - -
Apr3g1050 701 MobiDBLite consensus disorder prediction 535 572 - -
Apr3g1050 701 SUPERFAMILY Protein kinase-like (PK-like) 128 427 IPR011009 -
Apr3g1050 701 MobiDBLite consensus disorder prediction 467 492 - -
Apr3g1050 701 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1050 701 PANTHER CELL DIVISION PROTEIN KINASE 1 688 - -
Apr3g1050 701 MobiDBLite consensus disorder prediction 475 492 - -
Apr3g1050 701 CDD STKc_CDK9_like 135 419 - -
Apr3g1050 701 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1050 701 MobiDBLite consensus disorder prediction 676 701 - -
Apr3g1050 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Apr3g1050 701 PANTHER CYCLIN-DEPENDENT KINASE 1 688 - -
Apr3g1050 701 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1050 701 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1050 Apr-Chr3 25205515 25211878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1050 127 462 Core Cell Cycle Gene Families AT5G10270 48.011 2.89e-109 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Apr3g1050 Pkinase 4.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1050 - - gmx:100807590 1177.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1050 3 25205515 25211878 Apr3g1050 3 25205515 25211878 ECH