Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1047 ATGGATCACCCAGTAAGTCAACCCTCCTCAACCAAGGTTGAAAGAAGGCTTGTTGAGAAAAACAGAAGAAACCAGATGAAGATCCTCTACTCCAAACTCTACTCTCTTCTCCCTAGCTATAACCCTAAGGAAGCGTTGCCGTTGCCTGACCAAGTAGACGAGGCAATCAACTACATCAAGAGTTTGGAAGCAAGGGTGAAGATGGCGAAGGAGAAGAAAGAGAGCTTACAGGGAAGGAAAAGATCACGTGGTGACATCTCAAGTAGTGCTTTTGCTGCAGCGGGTTTTGCAAAATCGCCACAACTTGAGATTCACGAAATGGGTTCTTCTCTAGAAGTTGTTCTCACGTGTGGGTTAGATAACCAGTTCATTTTCTATGAAATCATTCGAATGCTGCATGAAGAGAAAATTGAGGTTAGAAGTGCCAATTCCTCACTGGCTGGAGATTCAGTGCTTCATGTTGTGCATGCAGAGATTCCGCAATCCTTTCTTCAATTCGGAGCAACCAAAGTAAGTGAGAGATTGAAAAGGTTTGTGAATGGATCGTCCAGTGACGTGGAAATTCAGCCCGAGTTGTGGGATTTTGAATATGGTACTGATGATATGTGGAGTTTCTAA 618 0.4369 MDHPVSQPSSTKVERRLVEKNRRNQMKILYSKLYSLLPSYNPKEALPLPDQVDEAINYIKSLEARVKMAKEKKESLQGRKRSRGDISSSAFAAAGFAKSPQLEIHEMGSSLEVVLTCGLDNQFIFYEIIRMLHEEKIEVRSANSSLAGDSVLHVVHAEIPQSFLQFGATKVSERLKRFVNGSSSDVEIQPELWDFEYGTDDMWSF* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1047 205 Gene3D - 4 89 IPR036638 GO:0046983
Apr3g1047 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 62 IPR011598 GO:0046983
Apr3g1047 205 Coils Coil 52 79 - -
Apr3g1047 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 8 79 IPR036638 GO:0046983
Apr3g1047 205 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 6 186 - -
Apr3g1047 205 Pfam Helix-loop-helix DNA-binding domain 13 63 IPR011598 GO:0046983
Apr3g1047 205 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 6 186 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1047 Apr-Chr3 25172899 25174121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1047 10 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.000 2.43e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g1047 HLH 9.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1047 - - gmx:100817883 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1047 3 25172899 25174121 Apr3g1047 3 25172899 25174121 ECH