Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1041 ATGTCACTGCAGGCTCTGAAGGAGACTCTGAGACCTTGCACAAACCAACAACCTTCTGCCTCTTCCTCAATTACCCAAACACACTCCAATTCAATTCTCCGTGATTCCGAGTCTCTCTTCCCAATCCCAATCTCTAGAAAACCCCCTAAATCCTCTCTTTCCCACCAGCTTCGCCGCCTTCAAGACCTTCCAATTCAACTCCACAACCCACAAACTCTAATCCACTCCAAAAAAGAAGAAGACCAACCAGAGATAAAGAGAGCGAAATTCTCTACACCCAAATTGTCCCCGTTTCAATTTGATCACACTGGACCCTTTGAGCCTCTCGTCCTGTCTTCACACGAAGAACTTCCTGTGGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAACATCAAAGAGAGGGGGTGAAGTTTTTGTTTGGTTTGTACAAGAATAATCATGGAGGCGTACTTGGAGATGACATGGGGCTTGGAAAAACCATTCAGGCAATAGCATTTCTTGCTGCCGTCTTTGGTAAAGAAGGACAGTCAATTTTAAATGAAATCCGGGTAGAGAAAAGAGACCCTGTATTAATAATTTGCCCAACTTCTGTTATTCACAACTGGGAGAGCGAATTCTCTAAGTGGGCTAATTTCAGTGTTTCTATTTACCATGGTGCAAACCGGGAACTGATATATGATAAGTTGGAAGCAAATGGAGTGGAGATACTTATTACCAGTTTTGACACTTACAGGATTCATGGAAGTTCCTTGTCAGATATCAATTGGAACATTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTATATAAAGCATGTTTACAAATTAAAACGCTGAGACGCTATGGTCTTACTGGGACTATAATGCAAAATAAGATTATGGAATTGTTCAATCTCTTTGACTGGGTTGCACCTGGATCCCTGGGAACCCGAGAACACTTTCGTGAGTTCTATGATGAACCCCTTAAGCATGGTCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATCGCTAATAAGAGAAAACAACACCTTGTGGTTGTTCTTCATAAATATCTGTTGAGAAGGACAAAGGAAGAAACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCAATGAGTGATTTGCAGAAACGTGTTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGTCTTATAAATAAGGATCTGCCTTGTGGTTGTGGTAGTCCTCTTACTCAAGTTGAATGTTGTAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACCTACACAGAGATAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCTTGTCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAAGTAAGGATGCAGAGTTTGCTGCCGCTGTCTTTGGCCCTGATATTGATTTAGTGGGAGGGAACACACAGAATGAAAGTTTCATGGGTCTAAGTGATGTGAAACACTGCGGCAAAATGAGAGCACTTGAAAAACTCTTCTTGTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTACTCTGTAAGGATGCTGGACATACTAGAGAAATTTCTCATACGAAAGGGTTACTGCTTCTCAAGACTTGATGGGTCCACTCCGACTAATTTTCGTCAATCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAGTTTTCTTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGAGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGTTTTGGACAAAAGCGGCACGTTGTGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAAGAACTTGTTTACTCTCGTCAGGTGTACAAACAGCAGCTCTCAAACATTGCTGTGTCTGGAAAGATGGAAAAGCGGTATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCGAGGAGAACTTTTTGGGATTTCCAATTTATTTCGAGATTTATCTGATAAGCTATTTACCAGTGAGATCATTGAATTGCATAAAGAACATGGAAATGAAACACAACAGGAAAAAATAAATATTCCAGAAGAAACAGGTTCGTTGGTATCAGAGTCAGAAACCGGATTATGTAATGAATCTCTGAGGACTGCAACAAGTAAACCGTATCTTGAAGACCTTGGCATTGTTTATGCTCATCGCAATGAAGACATAATCAACTTCGGGCCAGGGGTTCAAGGGAATATAAATGCCAACATTCCTTCAAATGATAGCCTAAACAAGCCAAGCATCTCTTTAGAACACCAAAGAAGAAAACCAGATTGTGTACCTACAAAACAGAGTGTTCCTTTGATTGATGAGAGGAAGAGAACCCAATATAGCCTCATTGCTCAGTCTATGGGCATGGGAGAACTTACATTTAGCAAATGGTTACTATCGGCGACTCCACTCGAGAGAGAGAAAGTGCTTCTCGACTACCAGAAGAAAAAGAAAATACCTAACAGTTGA 2598 0.4157 MSLQALKETLRPCTNQQPSASSSITQTHSNSILRDSESLFPIPISRKPPKSSLSHQLRRLQDLPIQLHNPQTLIHSKKEEDQPEIKRAKFSTPKLSPFQFDHTGPFEPLVLSSHEELPVVQVPASINCRLLEHQREGVKFLFGLYKNNHGGVLGDDMGLGKTIQAIAFLAAVFGKEGQSILNEIRVEKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGANRELIYDKLEANGVEILITSFDTYRIHGSSLSDINWNIVIIDEAHRLKNEKSKLYKACLQIKTLRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVVVLHKYLLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYRRMLQLPDIQCLINKDLPCGCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGPDIDLVGGNTQNESFMGLSDVKHCGKMRALEKLFLSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNFRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFRGELFGISNLFRDLSDKLFTSEIIELHKEHGNETQQEKINIPEETGSLVSESETGLCNESLRTATSKPYLEDLGIVYAHRNEDIINFGPGVQGNINANIPSNDSLNKPSISLEHQRRKPDCVPTKQSVPLIDERKRTQYSLIAQSMGMGELTFSKWLLSATPLEREKVLLDYQKKKKIPNS* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1041 865 Pfam Helicase conserved C-terminal domain 519 631 IPR001650 -
Apr3g1041 865 CDD SF2_C_SNF 513 642 - -
Apr3g1041 865 SMART ultradead3 126 321 IPR014001 -
Apr3g1041 865 PANTHER SNF2/RAD54 FAMILY MEMBER 76 802 - -
Apr3g1041 865 Pfam SNF2-related domain 146 403 IPR000330 GO:0005524|GO:0140658
Apr3g1041 865 Gene3D - 375 729 IPR027417 -
Apr3g1041 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 684 IPR027417 -
Apr3g1041 865 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 76 802 - -
Apr3g1041 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 363 IPR027417 -
Apr3g1041 865 MobiDBLite consensus disorder prediction 1 32 - -
Apr3g1041 865 Gene3D - 107 362 IPR038718 -
Apr3g1041 865 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 522 675 IPR001650 -
Apr3g1041 865 SMART helicmild6 548 631 IPR001650 -
Apr3g1041 865 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 313 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1041 Apr-Chr3 25129880 25136097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1041 520 661 RAD5 or RAD16-like Gene Family AT5G43530 39.437 2.99e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr3g1041 SNF2_N 3.7e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1041 K20098 - gmx:100781003 1511.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1041 3 25129880 25136097 Apr3g1041 3 25129880 25136097 ECH